STRINGSTRING
B9G98_04462 B9G98_04462 B9G98_04530 B9G98_04530 B9G98_04702 B9G98_04702 B9G98_04679 B9G98_04679 B9G98_02368 B9G98_02368 B9G98_02249 B9G98_02249 B9G98_00073 B9G98_00073 B9G98_04044 B9G98_04044 B9G98_04092 B9G98_04092 B9G98_04211 B9G98_04211 B9G98_00934 B9G98_00934 B9G98_00916 B9G98_00916 B9G98_00928 B9G98_00928 SPB1 SPB1 B9G98_00791 B9G98_00791 B9G98_00699 B9G98_00699 B9G98_00675 B9G98_00675 B9G98_00671 B9G98_00671 B9G98_00696 B9G98_00696 B9G98_00693 B9G98_00693 B9G98_00656 B9G98_00656 B9G98_00485 B9G98_00485 B9G98_00409 B9G98_00409 B9G98_00269 B9G98_00269 B9G98_00129 B9G98_00129 B9G98_00137 B9G98_00137 B9G98_00174 B9G98_00174 B9G98_00102 B9G98_00102 B9G98_00023 B9G98_00023 B9G98_03999 B9G98_03999 B9G98_04018 B9G98_04018 TIF6 TIF6 B9G98_03753 B9G98_03753 B9G98_03701 B9G98_03701 B9G98_03676 B9G98_03676 B9G98_03539 B9G98_03539 B9G98_03236 B9G98_03236 B9G98_03161 B9G98_03161 B9G98_03119 B9G98_03119 B9G98_03072 B9G98_03072 B9G98_02972 B9G98_02972 B9G98_02925 B9G98_02925 B9G98_02916 B9G98_02916 B9G98_02726 B9G98_02726 ERB1 ERB1 B9G98_02338 B9G98_02338 B9G98_02652 B9G98_02652 YTM1 YTM1 B9G98_02409 B9G98_02409 B9G98_02251 B9G98_02251 B9G98_02188 B9G98_02188 B9G98_02055 B9G98_02055 B9G98_02061 B9G98_02061 B9G98_02030 B9G98_02030 NOP7 NOP7 B9G98_01869 B9G98_01869 B9G98_01864 B9G98_01864 B9G98_01546 B9G98_01546 B9G98_01470 B9G98_01470 B9G98_01431 B9G98_01431 B9G98_01392 B9G98_01392 B9G98_01337 B9G98_01337 B9G98_01229 B9G98_01229 B9G98_01207 B9G98_01207 B9G98_01206 B9G98_01206 B9G98_01142 B9G98_01142 B9G98_01128 B9G98_01128 B9G98_01122 B9G98_01122 B9G98_01059 B9G98_01059 B9G98_00997 B9G98_00997 B9G98_00966 B9G98_00966
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
B9G98_04462Ribosome biogenesis protein MAK21. (913 aa)
B9G98_04530Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (232 aa)
B9G98_0470260S ribosomal protein L35-B. (119 aa)
B9G98_04679Large subunit GTPase 1. (595 aa)
B9G98_0236860S ribosomal subunit assembly/export protein LOC1. (185 aa)
B9G98_02249ATP-dependent RNA helicase MRH4, mitochondrial. (491 aa)
B9G98_00073Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family. (381 aa)
B9G98_04044Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (633 aa)
B9G98_04092Ribosomal RNA-processing protein 15. (207 aa)
B9G98_04211Ribosome assembly protein SQT1. (417 aa)
B9G98_00934Ribosome biogenesis protein C8F11.04. (327 aa)
B9G98_00916Ribosome assembly protein 4. (509 aa)
B9G98_0092860S ribosomal protein L5. (295 aa)
SPB1AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (783 aa)
B9G98_00791Uncharacterized protein. (172 aa)
B9G98_00699Protein MAK11. (360 aa)
B9G98_00675Nuclear GTP-binding protein NUG1. (484 aa)
B9G98_00671Nucleolar protein 4. (649 aa)
B9G98_00696rRNA-processing protein EBP2. (313 aa)
B9G98_00693Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4577 aa)
B9G98_00656DnaJ subfamily C member 21. (408 aa)
B9G98_00485Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. (629 aa)
B9G98_00409Uncharacterized protein. (129 aa)
B9G98_00269Nucleolar protein 16. (196 aa)
B9G98_00129Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (193 aa)
B9G98_00137Synchronized import protein 1. (557 aa)
B9G98_00174DNA polymerase V. (945 aa)
B9G98_00102Ribosome assembly protein 3. (136 aa)
B9G98_00023Nucleolar pre-ribosomal-associated protein 1. (1362 aa)
B9G98_0399960S ribosomal protein L33-B. (107 aa)
B9G98_04018RNA exonuclease 4. (266 aa)
TIF6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (239 aa)
B9G98_03753Nucleolar complex protein 2. (618 aa)
B9G98_03701Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43. (734 aa)
B9G98_03676WD repeat-containing protein JIP5. (332 aa)
B9G98_03539ATPase family gene 2 protein. (722 aa)
B9G98_03236Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (692 aa)
B9G98_03161Protein MAK16; Belongs to the MAK16 family. (294 aa)
B9G98_03119Protein HIT1. (131 aa)
B9G98_03072Ribosomal RNA-processing protein 14. (411 aa)
B9G98_02972C3H1-type domain-containing protein. (174 aa)
B9G98_0292560S ribosome subunit biogenesis protein NOP8. (386 aa)
B9G98_02916rRNA biogenesis protein rrp5. (1586 aa)
B9G98_02726Ribosome biogenesis protein NSA1. (356 aa)
ERB1Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (761 aa)
B9G98_02338Ribosome production factor 1. (293 aa)
B9G98_02652Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (381 aa)
YTM1Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (421 aa)
B9G98_02409Ribosome biogenesis protein RLP24. (188 aa)
B9G98_0225160S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (181 aa)
B9G98_0218860S ribosomal protein L10. (219 aa)
B9G98_0205560S ribosomal protein L7. (249 aa)
B9G98_02061SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (582 aa)
B9G98_02030Histidine protein methyltransferase 1. (292 aa)
NOP7Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (576 aa)
B9G98_01869Ribosome biogenesis protein SSF2. (398 aa)
B9G98_01864Pumilio y domain family member 6. (607 aa)
B9G98_01546Protein LAS1. (359 aa)
B9G98_0147060S ribosomal protein L14-A. (137 aa)
B9G98_0143160S ribosomal protein L25-B; Belongs to the universal ribosomal protein uL23 family. (144 aa)
B9G98_01392Ribosome biogenesis protein RPF2. (316 aa)
B9G98_0133760S acidic ribosomal protein P0; Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome t [...] (311 aa)
B9G98_01229Ribosome biogenesis protein BRX1. (281 aa)
B9G98_01207Putative AAA domain-containing protein C16E9.10c. (742 aa)
B9G98_01206Polynucleotide 5'-hydroxyl-kinase grc3. (488 aa)
B9G98_0114260S ribosomal protein L8-B. (262 aa)
B9G98_0112860S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (387 aa)
B9G98_0112260S ribosomal protein L26-A. (127 aa)
B9G98_01059RRM domain-containing protein. (229 aa)
B9G98_0099760S ribosomal protein L6-B. (179 aa)
B9G98_00966Cytoplasmic 60S subunit biogenesis factor REI1. (399 aa)
Your Current Organism:
Wickerhamiella sorbophila
NCBI taxonomy Id: 45607
Other names: AJ 4995, ATCC 60130, CBS 6739, CCRC 22618, CCRC:22618, Candida sorbophila, NRRL Y-7921, Torulopsis sorbophila, W. sorbophila
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.