STRINGSTRING
APO89235.1 APO89235.1 APO89236.1 APO89236.1 hrpA hrpA xopN xopN xopF2 xopF2 xopC xopC xopE2 xopE2 xopJ xopJ hrpXv hrpXv hrpG hrpG xopO xopO xopB xopB xopX xopX avrRxv avrRxv hpaH hpaH xopA xopA hrcC hrcC hrcT hrcT hrpB7 hrpB7 hrcN hrcN hrcL hrcL hrpB4 hrpB4 hrcJ hrcJ hrpB2 hrpB2 hrpB1 hrpB1 hrcU hrcU hrcV hrcV hpaC hpaC hrcQ hrcQ hrcR hrcR hrcS hrcS hpaA hpaA hrcD hrcD hrpD6 hrpD6 hrpE hrpE hpaB hpaB hpaE hpaE APO92131.1 APO92131.1 xopF1 xopF1 hpaD hpaD hrpF hrpF hpaF hpaF hpaG hpaG xopE1 xopE1 avrBs2 avrBs2 xopQ xopQ BJD11_23270 BJD11_23270 avrRxo1 avrRxo1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
APO89235.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)
APO89236.1Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (531 aa)
hrpAATP-dependent RNA helicase HrpA; Derived by automated computational analysis using gene prediction method: Protein Homology. (1373 aa)
xopNType III secretion system effector protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (733 aa)
xopF2Hypothetical protein; Frameshifted; incomplete; partial on complete genome; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)
xopCOuter protein C; Derived by automated computational analysis using gene prediction method: Protein Homology. (515 aa)
xopE2Avirulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa)
xopJHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (373 aa)
hrpXvAraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (476 aa)
hrpGTranscriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
xopOHypothetical protein; Internal stop; incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (120 aa)
xopBHypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (515 aa)
xopXType III secretion system effector protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (699 aa)
avrRxvAvirulence protein AvrRxv; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
hpaHLytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)
xopAHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (113 aa)
hrcCIS1595 family transposase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (607 aa)
hrcTEscT/YscT/HrcT family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
hrpB7Type III secretion protein HrpB7; Derived by automated computational analysis using gene prediction method: Protein Homology. (169 aa)
hrcNEscN/YscN/HrcN family type III secretion system ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (442 aa)
hrcLATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
hrpB4Type III secretion protein HrpB4; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
hrcJEscJ/YscJ/HrcJ family type III secretion inner membrane ring protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
hrpB2Type III secretion protein HrpB2; Derived by automated computational analysis using gene prediction method: Protein Homology. (130 aa)
hrpB1Serine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (151 aa)
hrcUEscU/YscU/HrcU family type III secretion system export apparatus switch protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (357 aa)
hrcVEscV/YscV/HrcV family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (645 aa)
hpaCType III secretion protein HpaP; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
hrcQAldolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
hrcREscR/YscR/HrcR family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
hrcSEscS/YscS/HrcS family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (86 aa)
hpaA4-hydroxyphenylacetate catabolism regulator HpaA; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
hrcDSerine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
hrpD6Serine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (80 aa)
hrpEHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (52 aa)
hpaB4-hydroxyphenylacetate 3-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
hpaEHypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (86 aa)
APO92131.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (63 aa)
xopF1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (670 aa)
hpaDHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (90 aa)
hrpFSerine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (806 aa)
hpaFHypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (93 aa)
hpaGHpaF protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (481 aa)
xopE1Avirulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)
avrBs2Avirulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (729 aa)
xopQHypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (464 aa)
BJD11_23270Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (98 aa)
avrRxo1Avirulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (450 aa)
Your Current Organism:
Xanthomonas euvesicatoria
NCBI taxonomy Id: 456327
Other names: ATCC 11633, Bacterium vesicatorium, DSM 19128, ICMP 109, ICMP 98, NCPPB 2968, X. euvesicatoria, Xanthomonas campestris (pv. vesicatoria), Xanthomonas campestris pv. Vesicatoria type A, Xanthomonas campestris pv. vesicatoria, Xanthomonas euvesicatoria Jones et al. 2006 emend. Constantin et al. 2016
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