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gumB gumB gumM gumM gumN gumN efp efp galU galU msbA msbA flgA flgA flgB flgB flgE flgE fliC fliC fleQ fleQ fliE fliE fliM fliM rpfF rpfF rpfC rpfC rpfH rpfH rpfG rpfG fhaC fhaC pgi pgi dnaK dnaK papD2 papD2 papD1 papD1 hrpG hrpG trpE trpE xcsD xcsD xopX xopX trpE-2 trpE-2 hmgA hmgA APO92073.1 APO92073.1 xopA xopA hrcC hrcC hpaB hpaB xopF1 xopF1 hrpF hrpF hpaF hpaF ilvD ilvD xopE1 xopE1 glnA glnA xylB1 xylB1 avrBs2 avrBs2 gyrB gyrB dnaA dnaA xopQ xopQ APO92597.1 APO92597.1 xynB3 xynB3 xynB2 xynB2 xynA xynA xylB3 xylB3 aguA aguA xylB2 xylB2 yapH yapH rpoD rpoD atpD atpD wzm wzm wzt wzt wbdA1 wbdA1 rmd rmd gmd gmd wxcN wxcN ugd2 ugd2 xanB xanB xadA2 xadA2 xadA1 xadA1 xpsD xpsD virB6 virB6 virB6-2 virB6-2 virB6-3 virB6-3 pilQ pilQ virB6-4 virB6-4 xopN xopN xopF2 xopF2 virD4 virD4
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
gumBPolysaccharide biosynthesis protein GumB; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
gumMGlycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyltransferase 26 family. (264 aa)
gumNTraB/GumN family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
efpElongation factor P; Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family. (188 aa)
galUUTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)
msbALipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. (589 aa)
flgAFlagella basal body P-ring formation protein FlgA; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
flgBFlagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body. (133 aa)
flgEFlagellar hook protein FlgE; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
fliCFlagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (399 aa)
fleQFis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (494 aa)
fliEFlagellar hook-basal body complex protein FliE; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)
fliMFlagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. (337 aa)
rpfFenoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
rpfCHybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (726 aa)
rpfHRpfH protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
rpfGTwo-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)
fhaCTransporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (566 aa)
pgiGlucose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GPI family. (504 aa)
dnaKMolecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. (641 aa)
papD2Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
papD1Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
hrpGTranscriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
trpEAminodeoxychorismate synthase, component I; Derived by automated computational analysis using gene prediction method: Protein Homology. (451 aa)
xcsDType II secretion system protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology. (689 aa)
xopXType III secretion system effector protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (699 aa)
trpE-2Anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...] (491 aa)
hmgAHomogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate. (439 aa)
APO92073.14-hydroxyphenylpyruvate dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (371 aa)
xopAHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (113 aa)
hrcCIS1595 family transposase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (607 aa)
hpaB4-hydroxyphenylacetate 3-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
xopF1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (670 aa)
hrpFSerine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (806 aa)
hpaFHypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (93 aa)
ilvDDihydroxy-acid dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the IlvD/Edd family. (612 aa)
xopE1Avirulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)
glnAType I glutamate--ammonia ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (469 aa)
xylB1Xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (527 aa)
avrBs2Avirulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (729 aa)
gyrBDNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (814 aa)
dnaAChromosomal replication initiation protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. (442 aa)
xopQHypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (464 aa)
APO92597.1alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (344 aa)
xynB31,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)
xynB2Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
xynAEndo-1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)
xylB3Glycoside hydrolase 43 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (564 aa)
aguAAlpha-glucuronidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 67 family. (731 aa)
xylB2Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (540 aa)
yapHHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (2727 aa)
rpoDRNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (625 aa)
atpDF0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. (468 aa)
wzmGlycosyl transferase family 1; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)
wztABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (428 aa)
wbdA1Mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (838 aa)
rmdGDP-mannose 4,6 dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
gmdGDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (346 aa)
wxcNSugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)
ugd2UDP-glucose 6-dehydrogenase; Catalyzes the formation of UDP-glucuronate from UDP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology. (388 aa)
xanBMannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family. (467 aa)
xadA2Phosphoribosylformylglycinamidine synthase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (1065 aa)
xadA1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (2357 aa)
xpsDType II secretion system protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology. (763 aa)
virB6Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
virB6-2Type IV secretion system protein virB6; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)
virB6-3Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (372 aa)
pilQFimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (649 aa)
virB6-4Type IV secretion system protein virB6; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)
xopNType III secretion system effector protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (733 aa)
xopF2Hypothetical protein; Frameshifted; incomplete; partial on complete genome; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)
virD4Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (557 aa)
Your Current Organism:
Xanthomonas euvesicatoria
NCBI taxonomy Id: 456327
Other names: ATCC 11633, Bacterium vesicatorium, DSM 19128, ICMP 109, ICMP 98, NCPPB 2968, X. euvesicatoria, Xanthomonas campestris (pv. vesicatoria), Xanthomonas campestris pv. Vesicatoria type A, Xanthomonas campestris pv. vesicatoria, Xanthomonas euvesicatoria Jones et al. 2006 emend. Constantin et al. 2016
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