STRINGSTRING
xopJ xopJ lipA lipA xopX xopX avrRxv avrRxv avrBs2 avrBs2 xopN xopN fliC fliC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
xopJHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (373 aa)
lipALipoyl synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. (337 aa)
xopXType III secretion system effector protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (699 aa)
avrRxvAvirulence protein AvrRxv; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
avrBs2Avirulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (729 aa)
xopNType III secretion system effector protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (733 aa)
fliCFlagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (399 aa)
Your Current Organism:
Xanthomonas euvesicatoria
NCBI taxonomy Id: 456327
Other names: ATCC 11633, Bacterium vesicatorium, DSM 19128, ICMP 109, ICMP 98, NCPPB 2968, X. euvesicatoria, Xanthomonas campestris (pv. vesicatoria), Xanthomonas campestris pv. Vesicatoria type A, Xanthomonas campestris pv. vesicatoria, Xanthomonas euvesicatoria Jones et al. 2006 emend. Constantin et al. 2016
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