STRINGSTRING
ilvD ilvD oprN1 oprN1 xylB1 xylB1 xopQ xopQ oprN12 oprN12 APO92597.1 APO92597.1 xylB3 xylB3 xylB2 xylB2 czcC czcC yapH yapH hrcS hrcS hpaA hpaA hrcD hrcD hrpD6 hrpD6 xopF1 xopF1 hrpF hrpF hrcT hrcT hrcC hrcC xopA xopA oprN2 oprN2 trpG trpG xopX xopX xopB xopB APO91199.1 APO91199.1 oprN4 oprN4 oprN5 oprN5 fhaC fhaC fliM fliM fliE fliE fleQ fleQ fliS fliS fliC fliC flgE flgE flgB flgB oprN6 oprN6 trbL trbL oprN7 oprN7 xopN xopN oprN8 oprN8 oprN9 oprN9 BJD11_04535 BJD11_04535 arsC arsC copB copB hrcN hrcN hrcL hrcL hrpB4 hrpB4 hrcJ hrcJ hrpB1 hrpB1 hrpB7 hrpB7 hrcU hrcU hrcV hrcV hpaC hpaC hrcQ hrcQ hrcR hrcR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ilvDDihydroxy-acid dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the IlvD/Edd family. (612 aa)
oprN1Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (482 aa)
xylB1Xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (527 aa)
xopQHypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (464 aa)
oprN12RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (486 aa)
APO92597.1alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (344 aa)
xylB3Glycoside hydrolase 43 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (564 aa)
xylB2Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (540 aa)
czcCCation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (423 aa)
yapHHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (2727 aa)
hrcSEscS/YscS/HrcS family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (86 aa)
hpaA4-hydroxyphenylacetate catabolism regulator HpaA; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
hrcDSerine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
hrpD6Serine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (80 aa)
xopF1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (670 aa)
hrpFSerine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (806 aa)
hrcTEscT/YscT/HrcT family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
hrcCIS1595 family transposase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (607 aa)
xopAHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (113 aa)
oprN2RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (502 aa)
trpGAnthranilate/aminodeoxychorismate synthase component II; TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; Derived by automated computational analysis using gene prediction method: Protein Homology. (192 aa)
xopXType III secretion system effector protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (699 aa)
xopBHypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (515 aa)
APO91199.1Arsenate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ArsC family. (118 aa)
oprN4RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (474 aa)
oprN5Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (467 aa)
fhaCTransporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (566 aa)
fliMFlagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. (337 aa)
fliEFlagellar hook-basal body complex protein FliE; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)
fleQFis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (494 aa)
fliSFlagellar export chaperone FliS; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
fliCFlagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (399 aa)
flgEFlagellar hook protein FlgE; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
flgBFlagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body. (133 aa)
oprN6Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (494 aa)
trbLP-type conjugative transfer protein TrbL; Derived by automated computational analysis using gene prediction method: Protein Homology. (549 aa)
oprN7Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (496 aa)
xopNType III secretion system effector protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (733 aa)
oprN8Outer membrane channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (489 aa)
oprN9Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (501 aa)
BJD11_04535Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)
arsCArsenate reductase (glutaredoxin); Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
copBCopper resistance protein CopB; Derived by automated computational analysis using gene prediction method: Protein Homology. (364 aa)
hrcNEscN/YscN/HrcN family type III secretion system ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (442 aa)
hrcLATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
hrpB4Type III secretion protein HrpB4; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
hrcJEscJ/YscJ/HrcJ family type III secretion inner membrane ring protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
hrpB1Serine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (151 aa)
hrpB7Type III secretion protein HrpB7; Derived by automated computational analysis using gene prediction method: Protein Homology. (169 aa)
hrcUEscU/YscU/HrcU family type III secretion system export apparatus switch protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (357 aa)
hrcVEscV/YscV/HrcV family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (645 aa)
hpaCType III secretion protein HpaP; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
hrcQAldolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
hrcREscR/YscR/HrcR family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
Your Current Organism:
Xanthomonas euvesicatoria
NCBI taxonomy Id: 456327
Other names: ATCC 11633, Bacterium vesicatorium, DSM 19128, ICMP 109, ICMP 98, NCPPB 2968, X. euvesicatoria, Xanthomonas campestris (pv. vesicatoria), Xanthomonas campestris pv. Vesicatoria type A, Xanthomonas campestris pv. vesicatoria, Xanthomonas euvesicatoria Jones et al. 2006 emend. Constantin et al. 2016
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