STRINGSTRING
xopA xopA ftsX ftsX rpoD rpoD virB6 virB6 virB6-2 virB6-2 virB6-3 virB6-3 virB6-4 virB6-4 xopN xopN virD4 virD4 gumG gumG xopE2 xopE2 fliC fliC fliH fliH fliJ fliJ flhF flhF cheZ cheZ APO90792.1 APO90792.1 fhaB1 fhaB1 dnaK dnaK hrpG hrpG xcsK xcsK mltB mltB xopB xopB xopX xopX hpaA hpaA xopF1 xopF1 hrpF hrpF avrBs2 avrBs2 gyrB gyrB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
xopAHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (113 aa)
ftsXCell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. (316 aa)
rpoDRNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (625 aa)
virB6Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
virB6-2Type IV secretion system protein virB6; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)
virB6-3Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (372 aa)
virB6-4Type IV secretion system protein virB6; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)
xopNType III secretion system effector protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (733 aa)
virD4Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (557 aa)
gumGPolysaccharide biosynthesis protein GumF; Derived by automated computational analysis using gene prediction method: Protein Homology. (362 aa)
xopE2Avirulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa)
fliCFlagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (399 aa)
fliHFlagellar assembly protein FliH; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)
fliJFlagellar export protein FliJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (151 aa)
flhFFlagellar biosynthesis protein FlhF; Derived by automated computational analysis using gene prediction method: Protein Homology. (566 aa)
cheZChemotaxis protein; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P). (208 aa)
APO90792.1Methyl-accepting chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (793 aa)
fhaB1Filamentous hemagglutinin; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (539 aa)
dnaKMolecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. (641 aa)
hrpGTranscriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
xcsKType II secretion system protein K; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa)
mltBLytic murein transglycosylase B; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)
xopBHypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (515 aa)
xopXType III secretion system effector protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (699 aa)
hpaA4-hydroxyphenylacetate catabolism regulator HpaA; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
xopF1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (670 aa)
hrpFSerine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (806 aa)
avrBs2Avirulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (729 aa)
gyrBDNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (814 aa)
Your Current Organism:
Xanthomonas euvesicatoria
NCBI taxonomy Id: 456327
Other names: ATCC 11633, Bacterium vesicatorium, DSM 19128, ICMP 109, ICMP 98, NCPPB 2968, X. euvesicatoria, Xanthomonas campestris (pv. vesicatoria), Xanthomonas campestris pv. Vesicatoria type A, Xanthomonas campestris pv. vesicatoria, Xanthomonas euvesicatoria Jones et al. 2006 emend. Constantin et al. 2016
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