STRINGSTRING
pgk pgk gumD gumD gumB gumB xopN xopN gumG gumG gumH gumH gumI gumI gumJ gumJ gumL gumL gumM gumM gumN gumN fleQ fleQ rpfF rpfF phoB phoB hrpD6 hrpD6 xopF1 xopF1 avrBs2 avrBs2 xopQ xopQ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pgkHypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phosphoglycerate kinase family. (391 aa)
gumDUndecaprenyl-phosphate glucose phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (484 aa)
gumBPolysaccharide biosynthesis protein GumB; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
xopNType III secretion system effector protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (733 aa)
gumGPolysaccharide biosynthesis protein GumF; Derived by automated computational analysis using gene prediction method: Protein Homology. (362 aa)
gumHGlycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology. (380 aa)
gumIGDP-mannose--glycolipid 4-beta-D-mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (349 aa)
gumJLipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (496 aa)
gumLPolysaccharide biosynthesis protein GumL; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
gumMGlycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyltransferase 26 family. (264 aa)
gumNTraB/GumN family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
fleQFis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (494 aa)
rpfFenoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
phoBPhosphate regulon transcriptional regulatory protein PhoB; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
hrpD6Serine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (80 aa)
xopF1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (670 aa)
avrBs2Avirulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (729 aa)
xopQHypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (464 aa)
Your Current Organism:
Xanthomonas euvesicatoria
NCBI taxonomy Id: 456327
Other names: ATCC 11633, Bacterium vesicatorium, DSM 19128, ICMP 109, ICMP 98, NCPPB 2968, X. euvesicatoria, Xanthomonas campestris (pv. vesicatoria), Xanthomonas campestris pv. Vesicatoria type A, Xanthomonas campestris pv. vesicatoria, Xanthomonas euvesicatoria Jones et al. 2006 emend. Constantin et al. 2016
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