19 items (Xanthomonas euvesicatoria) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	lytS	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
	exsG	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
	APO89825.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1189 aa)
	APO89826.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1181 aa)
	BJD11_07125	Hypothetical protein; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa)
	xopN	Type III secretion system effector protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (733 aa)
	APO90251.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)
	APO90295.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)
	xopE2	Avirulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa)
	APO92970.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
	APO90787.1	Methyl-accepting chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (753 aa)
	APO91438.1	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (524 aa)
	xopX	Type III secretion system effector protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (699 aa)
	xopA	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (113 aa)
	hpaA	4-hydroxyphenylacetate catabolism regulator HpaA; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
	xopF1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (670 aa)
	xopE1	Avirulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)
	xopQ	Hypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (464 aa)
	BJD11_24285	Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa)

Your Current Organism:

Xanthomonas euvesicatoria

NCBI taxonomy Id: 456327
Other names: ATCC 11633, Bacterium vesicatorium, DSM 19128, ICMP 109, ICMP 98, NCPPB 2968, X. euvesicatoria, Xanthomonas campestris (pv. vesicatoria), Xanthomonas campestris pv. Vesicatoria type A, Xanthomonas campestris pv. vesicatoria, Xanthomonas euvesicatoria Jones et al. 2006 emend. Constantin et al. 2016

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APO89825.1	APO89826.1	BJD11_06980	BJD11_06985	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
APO89825.1	APO90295.1	BJD11_06980	BJD11_09765	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
APO89825.1	APO92970.1	BJD11_06980	BJD11_11895	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.440
APO89825.1	BJD11_24285	BJD11_06980	BJD11_24285	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.675
APO89825.1	exsG	BJD11_06980	BJD11_06435	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.698
APO89825.1	lytS	BJD11_06980	BJD11_11860	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.675
APO89826.1	APO89825.1	BJD11_06985	BJD11_06980	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
APO89826.1	APO90295.1	BJD11_06985	BJD11_09765	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.805
APO89826.1	APO92970.1	BJD11_06985	BJD11_11895	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
APO89826.1	BJD11_24285	BJD11_06985	BJD11_24285	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.675
APO89826.1	exsG	BJD11_06985	BJD11_06435	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.698
APO89826.1	lytS	BJD11_06985	BJD11_11860	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.675
APO90251.1	APO90295.1	BJD11_09505	BJD11_09765	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.635
APO90251.1	APO92970.1	BJD11_09505	BJD11_11895	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.752
APO90295.1	APO89825.1	BJD11_09765	BJD11_06980	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
APO90295.1	APO89826.1	BJD11_09765	BJD11_06985	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.805
APO90295.1	APO90251.1	BJD11_09765	BJD11_09505	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.635
APO90295.1	APO92970.1	BJD11_09765	BJD11_11895	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.738
APO90295.1	BJD11_24285	BJD11_09765	BJD11_24285	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.675
APO90295.1	exsG	BJD11_09765	BJD11_06435	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980

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