STRINGSTRING
hrcN hrcN hrcL hrcL hrcJ hrcJ hrcU hrcU hrcV hrcV hrcQ hrcQ hpaA hpaA hrpE hrpE hpaB hpaB hrpF hrpF hrcC hrcC xopA xopA xopB xopB hrpG hrpG xopE2 xopE2 xopC xopC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
hrcNEscN/YscN/HrcN family type III secretion system ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (442 aa)
hrcLATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
hrcJEscJ/YscJ/HrcJ family type III secretion inner membrane ring protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
hrcUEscU/YscU/HrcU family type III secretion system export apparatus switch protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (357 aa)
hrcVEscV/YscV/HrcV family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (645 aa)
hrcQAldolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
hpaA4-hydroxyphenylacetate catabolism regulator HpaA; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
hrpEHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (52 aa)
hpaB4-hydroxyphenylacetate 3-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
hrpFSerine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (806 aa)
hrcCIS1595 family transposase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (607 aa)
xopAHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (113 aa)
xopBHypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (515 aa)
hrpGTranscriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
xopE2Avirulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa)
xopCOuter protein C; Derived by automated computational analysis using gene prediction method: Protein Homology. (515 aa)
Your Current Organism:
Xanthomonas euvesicatoria
NCBI taxonomy Id: 456327
Other names: ATCC 11633, Bacterium vesicatorium, DSM 19128, ICMP 109, ICMP 98, NCPPB 2968, X. euvesicatoria, Xanthomonas campestris (pv. vesicatoria), Xanthomonas campestris pv. Vesicatoria type A, Xanthomonas campestris pv. vesicatoria, Xanthomonas euvesicatoria Jones et al. 2006 emend. Constantin et al. 2016
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