STRINGSTRING
avrBs2 avrBs2 xopQ xopQ suh suh xopN xopN rpfF rpfF hemK hemK xopX xopX virK virK hrcC hrcC hrcT hrcT hrpB7 hrpB7 hrcN hrcN hrpB4 hrpB4 hrcJ hrcJ hrpB2 hrpB2 hrpB1 hrpB1 hrcU hrcU hrcV hrcV hrcQ hrcQ hrcR hrcR hrcS hrcS hrpD6 hrpD6 hrpE hrpE hpaB hpaB hrpF hrpF hpaF hpaF
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
avrBs2Avirulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (729 aa)
xopQHypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (464 aa)
suhAmylosucrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (639 aa)
xopNType III secretion system effector protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (733 aa)
rpfFenoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
hemKprotein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily. (286 aa)
xopXType III secretion system effector protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (699 aa)
virKHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)
hrcCIS1595 family transposase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (607 aa)
hrcTEscT/YscT/HrcT family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
hrpB7Type III secretion protein HrpB7; Derived by automated computational analysis using gene prediction method: Protein Homology. (169 aa)
hrcNEscN/YscN/HrcN family type III secretion system ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (442 aa)
hrpB4Type III secretion protein HrpB4; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
hrcJEscJ/YscJ/HrcJ family type III secretion inner membrane ring protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
hrpB2Type III secretion protein HrpB2; Derived by automated computational analysis using gene prediction method: Protein Homology. (130 aa)
hrpB1Serine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (151 aa)
hrcUEscU/YscU/HrcU family type III secretion system export apparatus switch protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (357 aa)
hrcVEscV/YscV/HrcV family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (645 aa)
hrcQAldolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
hrcREscR/YscR/HrcR family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
hrcSEscS/YscS/HrcS family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (86 aa)
hrpD6Serine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (80 aa)
hrpEHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (52 aa)
hpaB4-hydroxyphenylacetate 3-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
hrpFSerine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (806 aa)
hpaFHypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (93 aa)
Your Current Organism:
Xanthomonas euvesicatoria
NCBI taxonomy Id: 456327
Other names: ATCC 11633, Bacterium vesicatorium, DSM 19128, ICMP 109, ICMP 98, NCPPB 2968, X. euvesicatoria, Xanthomonas campestris (pv. vesicatoria), Xanthomonas campestris pv. Vesicatoria type A, Xanthomonas campestris pv. vesicatoria, Xanthomonas euvesicatoria Jones et al. 2006 emend. Constantin et al. 2016
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