STRINGSTRING
virB8 virB8 virB6 virB6 virB6-2 virB6-2 virB6-3 virB6-3 virB6-4 virB6-4 APO89652.1 APO89652.1 virD4 virD4 virB9 virB9 gumM gumM rpfB rpfB rpfF rpfF rpfH rpfH rpfG rpfG folP folP pyrG pyrG hrpG hrpG clpP clpP clp clp APO92300.1 APO92300.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
virB8Conjugative transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
virB6Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
virB6-2Type IV secretion system protein virB6; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)
virB6-3Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (372 aa)
virB6-4Type IV secretion system protein virB6; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)
APO89652.1Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: Protein Homology. (1144 aa)
virD4Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (557 aa)
virB9Type IV secretion system protein VirB9; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)
gumMGlycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyltransferase 26 family. (264 aa)
rpfBlong-chain-fatty-acid--CoA ligase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology. (560 aa)
rpfFenoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
rpfHRpfH protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
rpfGTwo-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)
folPDihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives. (300 aa)
pyrGCTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. (554 aa)
hrpGTranscriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
clpPATP-dependent Clp endopeptidase, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. (208 aa)
clpTranscriptional regulator Crp; Global transcriptional regulator that regulates virulence factors production by activating or repressing the expression of a large set of genes in diffusible signal factor (DSF) pathway. (230 aa)
APO92300.1ATP-dependent endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (521 aa)
Your Current Organism:
Xanthomonas euvesicatoria
NCBI taxonomy Id: 456327
Other names: ATCC 11633, Bacterium vesicatorium, DSM 19128, ICMP 109, ICMP 98, NCPPB 2968, X. euvesicatoria, Xanthomonas campestris (pv. vesicatoria), Xanthomonas campestris pv. Vesicatoria type A, Xanthomonas campestris pv. vesicatoria, Xanthomonas euvesicatoria Jones et al. 2006 emend. Constantin et al. 2016
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