STRINGSTRING
Mboo_0464 Mboo_0464 Mboo_1050 Mboo_1050 Mboo_1200 Mboo_1200 hemL hemL Mboo_1406 Mboo_1406 Mboo_1834 Mboo_1834 Mboo_1984 Mboo_1984 Mboo_1991 Mboo_1991 Mboo_1995 Mboo_1995 Mboo_1996 Mboo_1996 Mboo_2044 Mboo_2044 Mboo_0144 Mboo_0144 Mboo_0056 Mboo_0056 Mboo_2054 Mboo_2054 Mboo_2096 Mboo_2096 iscS iscS Mboo_0168 Mboo_0168 hisC hisC Mboo_2138 Mboo_2138 mfnA mfnA glyA glyA Mboo_0053 Mboo_0053 Mboo_1994 Mboo_1994 Mboo_0003 Mboo_0003 Mboo_2045 Mboo_2045 Mboo_0298 Mboo_0298 Mboo_0356 Mboo_0356
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Mboo_0464Putative transcriptional regulator, GntR family; PFAM: aminotransferase, class I and II; KEGG: mhu:Mhun_1460 aminotransferase, class I and II. (391 aa)
Mboo_1050Sep-tRNA; Converts O-phospho-L-seryl-tRNA(Cys) (Sep-tRNA(Cys)) to L- cysteinyl-tRNA(Cys) (Cys-tRNA(Cys)); Belongs to the SepCysS family. (392 aa)
Mboo_1200PFAM: aminotransferase, class I and II; KEGG: mhu:Mhun_0911 aminotransferase, class I and II. (371 aa)
hemLTIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: mhu:Mhun_2560 glutamate-1-semialdehyde-2,1-aminomutase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. HemL subfamily. (413 aa)
Mboo_1406PFAM: aminotransferase, class I and II; KEGG: mhu:Mhun_0940 aminotransferase, class I and II. (332 aa)
Mboo_1834PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mhu:Mhun_2142 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (363 aa)
Mboo_1984PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mhu:Mhun_2219 phosphoadenosine phosphosulfate reductase. (394 aa)
Mboo_1991Cystathionine gamma-lyase; PFAM: aminotransferase, class V; Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cystathionine gamma-lyase. (386 aa)
Mboo_1995PFAM: aminotransferase, class V; Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sil:SPO0413 Cys/Met metabolism PLP-dependent enzyme family protein. (403 aa)
Mboo_1996PFAM: aminotransferase, class I and II; KEGG: sus:Acid_3616 aminotransferase, class I and II. (379 aa)
Mboo_2044KEGG: mhu:Mhun_2181 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase. (431 aa)
Mboo_0144PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: bam:Bamb_4345 lysine decarboxylase. (769 aa)
Mboo_0056PFAM: aminotransferase, class I and II; KEGG: mhu:Mhun_2478 aminotransferase, class I and II. (379 aa)
Mboo_2054PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; phosphoadenosine phosphosulfate reductase; KEGG: mhu:Mhun_2219 phosphoadenosine phosphosulfate reductase. (880 aa)
Mboo_2096PFAM: aminotransferase, class I and II; KEGG: mhu:Mhun_2943 aminotransferase, class I and II. (382 aa)
iscSAminotransferase, class V; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. (398 aa)
Mboo_0168Aminotransferase, class I and II; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: sus:Acid_3616 aminotransferase, class I and II. (400 aa)
hisCPFAM: aminotransferase, class I and II; KEGG: mhu:Mhun_2525 histidinol-phosphate aminotransferase. (351 aa)
Mboo_2138TIGRFAM: acetylornithine and succinylornithine aminotransferases; PFAM: aminotransferase class-III; KEGG: mhu:Mhun_2526 acetylornithine and succinylornithine aminotransferases; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (383 aa)
mfnAPyridoxal-dependent decarboxylase; Catalyzes the decarboxylation of L-tyrosine to produce tyramine for methanofuran biosynthesis. Can also catalyze the decarboxylation of L-aspartate to produce beta-alanine for coenzyme A (CoA) biosynthesis; Belongs to the group II decarboxylase family. MfnA subfamily. (365 aa)
glyAGlycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. Also exhibits THF-independent aldolase activity toward beta- hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (417 aa)
Mboo_0053PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mhu:Mhun_2475 serine--glyoxylate transaminase. (376 aa)
Mboo_1994KEGG: mhu:Mhun_2181 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase. (467 aa)
Mboo_0003PFAM: aminotransferase, class I and II; KEGG: mhu:Mhun_2473 aminotransferase, class I and II. (385 aa)
Mboo_2045Sep-tRNA; Converts O-phospho-L-seryl-tRNA(Cys) (Sep-tRNA(Cys)) to L- cysteinyl-tRNA(Cys) (Cys-tRNA(Cys)); Belongs to the SepCysS family. (454 aa)
Mboo_0298PFAM: aminotransferase, class V; KEGG: mhu:Mhun_0255 aminotransferase, class V. (383 aa)
Mboo_0356PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gvi:gll4384 cysteine desulfurase. (390 aa)
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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