STRINGSTRING
ALC62_15380 ALC62_15380 ALC62_15272 ALC62_15272 ALC62_15281 ALC62_15281 ALC62_15058 ALC62_15058 ALC62_15078 ALC62_15078 ALC62_15056 ALC62_15056 ALC62_15076 ALC62_15076 ALC62_14327 ALC62_14327 ALC62_14058 ALC62_14058 ALC62_13485 ALC62_13485 LSM3 LSM3 ALC62_12735 ALC62_12735 ALC62_12156 ALC62_12156 ALC62_12120 ALC62_12120 ALC62_12373 ALC62_12373 ALC62_11976 ALC62_11976 ALC62_12162 ALC62_12162 ALC62_11557 ALC62_11557 ALC62_11015 ALC62_11015 ALC62_10428 ALC62_10428 ALC62_10028 ALC62_10028 ALC62_10052 ALC62_10052 ALC62_09947 ALC62_09947 ALC62_09592 ALC62_09592 ALC62_08605 ALC62_08605 ALC62_08067 ALC62_08067 ALC62_07767 ALC62_07767 ALC62_07048 ALC62_07048 ALC62_06857 ALC62_06857 ALC62_06609 ALC62_06609 ALC62_05826 ALC62_05826 ALC62_05241 ALC62_05241 ALC62_04455 ALC62_04455 ALC62_04110 ALC62_04110 ALC62_03762 ALC62_03762 ALC62_03569 ALC62_03569 ALC62_03560 ALC62_03560 ALC62_03484 ALC62_03484 ALC62_03282 ALC62_03282 ALC62_03159 ALC62_03159 ALC62_03081 ALC62_03081 ALC62_02754 ALC62_02754 ALC62_01961 ALC62_01961 ALC62_01832 ALC62_01832 ALC62_00635 ALC62_00635 ALC62_00628 ALC62_00628 ALC62_00639 ALC62_00639 ALC62_00636 ALC62_00636 ALC62_00709 ALC62_00709 ALC62_00678 ALC62_00678 ALC62_00128 ALC62_00128 ALC62_15200 ALC62_15200 LSM5 LSM5 ALC62_13807 ALC62_13807 ALC62_14689 ALC62_14689 ALC62_14491 ALC62_14491 ALC62_13970 ALC62_13970 ALC62_14179 ALC62_14179 ALC62_13210 ALC62_13210 ALC62_13728 ALC62_13728 ALC62_12980 ALC62_12980 ALC62_13384 ALC62_13384 ALC62_13386 ALC62_13386 ALC62_13401 ALC62_13401 ALC62_12536 ALC62_12536 ALC62_13154 ALC62_13154 ALC62_13207 ALC62_13207 ALC62_12577 ALC62_12577 ALC62_11270 ALC62_11270 ALC62_11293 ALC62_11293 ALC62_11365 ALC62_11365 ALC62_11386 ALC62_11386 ALC62_11130 ALC62_11130 ALC62_10514 ALC62_10514 ALC62_11332 ALC62_11332 ALC62_10597 ALC62_10597 ALC62_10165 ALC62_10165 ALC62_09423 ALC62_09423 ALC62_09329 ALC62_09329 ALC62_09810 ALC62_09810 ALC62_09144 ALC62_09144 ALC62_08762 ALC62_08762 ALC62_09131 ALC62_09131 ALC62_08211 ALC62_08211 ALC62_08212 ALC62_08212 ALC62_07977 ALC62_07977 ALC62_07461 ALC62_07461 ALC62_07339 ALC62_07339 ALC62_06994 ALC62_06994 ALC62_06470 ALC62_06470 ALC62_06248 ALC62_06248 LSM8 LSM8 ALC62_05900 ALC62_05900 ALC62_06216 ALC62_06216 ALC62_06242 ALC62_06242 ALC62_05673 ALC62_05673 ALC62_05688 ALC62_05688 ALC62_05497 ALC62_05497 ALC62_05699 ALC62_05699 ALC62_05468 ALC62_05468 ALC62_04755 ALC62_04755 ALC62_04777 ALC62_04777 ALC62_04782 ALC62_04782 ALC62_05480 ALC62_05480 LSM4 LSM4 ALC62_04595 ALC62_04595 ALC62_04878 ALC62_04878 ALC62_04889 ALC62_04889 ALC62_03658 ALC62_03658 ALC62_03413 ALC62_03413 ALC62_02391 ALC62_02391 ALC62_01734 ALC62_01734 ALC62_01264 ALC62_01264 ALC62_00531 ALC62_00531 ALC62_00390 ALC62_00390 ALC62_00399 ALC62_00399 ALC62_00533 ALC62_00533 ALC62_00406 ALC62_00406
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ALC62_15380U4/U6.U5 tri-snRNP-associated protein 2. (507 aa)
ALC62_15272Small nuclear ribonucleoprotein Sm D2. (134 aa)
ALC62_15281U6 snRNA-associated Sm-like protein LSm7. (117 aa)
ALC62_15058HIV Tat-specific factor 1 like protein. (243 aa)
ALC62_15078BUD13 like protein. (523 aa)
ALC62_15056HIV Tat-specific factor 1. (235 aa)
ALC62_15076Zinc finger matrin-type protein 5. (166 aa)
ALC62_14327Transcription elongation regulator 1. (1254 aa)
ALC62_14058Pre-mRNA-processing factor 19. (503 aa)
ALC62_13485Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (172 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (100 aa)
ALC62_12735Gastrulation defective protein 1 like protein. (665 aa)
ALC62_12156Splicing factor 3B subunit 3. (1217 aa)
ALC62_12120WD40 repeat-containing protein SMU1. (514 aa)
ALC62_12373Putative ATP-dependent RNA helicase DHX30. (904 aa)
ALC62_11976WW domain-binding protein 4. (327 aa)
ALC62_12162Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (481 aa)
ALC62_11557U11/U12 small nuclear ribonucleoprotein 48 kDa protein. (408 aa)
ALC62_11015Squamous cell carcinoma antigen recognized by T-cells 3. (906 aa)
ALC62_10428Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15. (1038 aa)
ALC62_10028Pre-mRNA-splicing factor CWC25 like protein. (589 aa)
ALC62_10052Polyglutamine-binding protein 1. (298 aa)
ALC62_09947Splicing factor 3A subunit 2. (273 aa)
ALC62_09592Coiled-coil domain-containing protein 12. (147 aa)
ALC62_08605Putative small nuclear ribonucleoprotein G. (39 aa)
ALC62_08067Peptidyl-prolyl cis-trans isomerase CWC27 like protein. (1499 aa)
ALC62_07767Protein Red. (532 aa)
ALC62_07048Uncharacterized protein. (962 aa)
ALC62_06857Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (85 aa)
ALC62_06609Uncharacterized protein. (325 aa)
ALC62_05826SH2 domain-containing adapter protein F. (1157 aa)
ALC62_05241PHD finger-like domain-containing protein 5A. (110 aa)
ALC62_04455Pre-mRNA-splicing factor 38A. (305 aa)
ALC62_04110Ubiquitin-like protein 5. (73 aa)
ALC62_03762Uncharacterized protein. (460 aa)
ALC62_03569Pre-mRNA-splicing factor SYF1. (829 aa)
ALC62_03560Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (116 aa)
ALC62_03484WW domain-binding protein 11. (559 aa)
ALC62_03282Transferrin. (610 aa)
ALC62_03159Pre-mRNA-splicing factor SPF27. (244 aa)
ALC62_03081Zinc finger matrin-type protein 2. (194 aa)
ALC62_02754Coiled-coil domain-containing protein 94. (334 aa)
ALC62_01961U6 snRNA-associated Sm-like protein LSm6; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (79 aa)
ALC62_01832Pre-mRNA branch site p14-like protein. (114 aa)
ALC62_00635Splicing factor 3A subunit 3. (500 aa)
ALC62_00628WD repeat-containing protein 69. (463 aa)
ALC62_00639Peroxisome proliferator-activated receptor gamma coactivator-related protein 1. (1025 aa)
ALC62_00636Transferrin. (737 aa)
ALC62_00709Peptidylprolyl isomerase domain and WD repeat-containing protein 1. (611 aa)
ALC62_00678Pre-mRNA-splicing factor SLU7. (573 aa)
ALC62_00128Pre-mRNA-splicing factor Syf2. (232 aa)
ALC62_15200U7 snRNA-associated Sm-like protein LSm10. (97 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (90 aa)
ALC62_13807Survival of motor neuron-related-splicing factor 30. (241 aa)
ALC62_14689Pre-mRNA-processing factor 6. (931 aa)
ALC62_14491Pre-mRNA-processing ATP-dependent RNA helicase PRP5. (756 aa)
ALC62_13970Small nuclear ribonucleoprotein Sm D3. (142 aa)
ALC62_14179U4/U6.U5 tri-snRNP-associated protein 1. (738 aa)
ALC62_13210Splicing factor 45. (384 aa)
ALC62_13728Serine/arginine repetitive matrix protein 2. (1099 aa)
ALC62_12980Beta-catenin-like protein 1. (593 aa)
ALC62_13384ATP-dependent RNA helicase DHX8. (1203 aa)
ALC62_13386Microfibrillar-associated protein 1. (456 aa)
ALC62_13401U4/U6 small nuclear ribonucleoprotein Prp4. (524 aa)
ALC62_12536Protein BUD31 like protein. (144 aa)
ALC62_13154U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein. (208 aa)
ALC62_13207U2 small nuclear ribonucleoprotein B. (231 aa)
ALC62_12577RNA-binding protein 40. (355 aa)
ALC62_11270Uncharacterized protein. (193 aa)
ALC62_11293Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
ALC62_11365U1 small nuclear ribonucleoprotein 70 kDa. (405 aa)
ALC62_11386Pre-mRNA-processing-splicing factor 8. (2372 aa)
ALC62_11130Serine/threonine-protein phosphatase 1 regulatory subunit 10. (1211 aa)
ALC62_10514Uncharacterized protein. (2133 aa)
ALC62_11332Pre-mRNA-splicing factor RBM22. (449 aa)
ALC62_10597Putative ATP-dependent RNA helicase DDX46. (871 aa)
ALC62_10165U4/U6 small nuclear ribonucleoprotein Prp3. (1337 aa)
ALC62_09423RNA-binding motif protein, X-linked 2. (144 aa)
ALC62_09329Pleiotropic regulator 1. (464 aa)
ALC62_09810Small nuclear ribonucleoprotein-associated protein. (208 aa)
ALC62_09144U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family. (175 aa)
ALC62_08762Uncharacterized protein. (219 aa)
ALC62_09131Pre-mRNA-processing factor 17. (728 aa)
ALC62_08211Leukocyte receptor cluster member 1. (286 aa)
ALC62_08212Small nuclear ribonucleoprotein F; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
ALC62_07977Uncharacterized protein. (234 aa)
ALC62_07461Uncharacterized protein. (578 aa)
ALC62_07339Smad nuclear-interacting protein 1. (258 aa)
ALC62_06994Cell division cycle 5-related protein. (789 aa)
ALC62_06470Protein crooked neck. (666 aa)
ALC62_06248Intron-binding protein aquarius. (1455 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
ALC62_05900Putative U2 small nuclear ribonucleoprotein A. (246 aa)
ALC62_06216Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (184 aa)
ALC62_06242Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (142 aa)
ALC62_05673CWF19-like protein 2. (630 aa)
ALC62_05688NK-tumor recognition protein. (558 aa)
ALC62_05497Splicing factor 3B subunit 2. (676 aa)
ALC62_05699Pre-mRNA-splicing factor 18. (335 aa)
ALC62_05468Calcium homeostasis endoplasmic reticulum protein. (761 aa)
ALC62_04755Splicing factor 3B subunit 4. (410 aa)
ALC62_04777Leucine-rich repeat-containing protein 51. (202 aa)
ALC62_04782Tr-type G domain-containing protein. (981 aa)
ALC62_05480Leucine-rich repeat-containing protein C10orf11 like protein. (225 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (125 aa)
ALC62_04595Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (227 aa)
ALC62_04878ATP-dependent RNA helicase DDX42; Belongs to the DEAD box helicase family. (768 aa)
ALC62_04889Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16. (885 aa)
ALC62_03658Splicing factor 3B subunit 1. (1303 aa)
ALC62_03413Splicing factor 3A subunit 1. (769 aa)
ALC62_02391Leucine-rich repeat-containing protein C10orf11 like protein. (610 aa)
ALC62_01734Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (1132 aa)
ALC62_01264U5 small nuclear ribonucleoprotein 40 kDa protein. (350 aa)
ALC62_00531Puff-specific protein Bx42. (519 aa)
ALC62_00390U4/U6 small nuclear ribonucleoprotein Prp31. (500 aa)
ALC62_00399Pre-mRNA-splicing factor ISY1 like protein. (187 aa)
ALC62_00533Puff-specific protein Bx42. (545 aa)
ALC62_00406Protein CWC15 like protein A. (187 aa)
Your Current Organism:
Cyphomyrmex costatus
NCBI taxonomy Id: 456900
Other names: C. costatus
Server load: low (16%) [HD]