(17 nodes) Mixed, incl. U2AF complex, and Regulation of transcriptional start site selection at RNA polymerase II promoter network (Cyphomyrmex costatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALC62_15252	Splicing factor U2af 38 kDa subunit. (240 aa)
	ALC62_15092	Uncharacterized protein. (1201 aa)
	ALC62_08367	Uncharacterized protein. (777 aa)
	ALC62_06697	Uncharacterized protein. (2758 aa)
	ALC62_06718	Serine/arginine-rich splicing factor 7. (207 aa)
	ALC62_06644	Serine/threonine-protein kinase SRPK1. (661 aa)
	ALC62_04134	Splicing factor U2af 38 kDa subunit. (240 aa)
	ALC62_00074	CCHC-type domain-containing protein. (322 aa)
	ALC62_03827	Transformer-2 protein like protein beta. (280 aa)
	ALC62_15822	U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1. (473 aa)
	ALC62_15885	Putative splicing factor, arginine/serine-rich 7. (496 aa)
	ALC62_12963	Serine-arginine protein 55. (727 aa)
	ALC62_13381	HSac2 domain-containing protein. (297 aa)
	ALC62_10166	Nucleolysin TIA-1 isoform p40. (552 aa)
	ALC62_10169	Nucleolysin TIA-1. (311 aa)
	ALC62_06059	RNA-binding protein 1. (301 aa)
	ALC62_02297	Serine/arginine-rich splicing factor 2. (194 aa)

Your Current Organism:

Cyphomyrmex costatus

NCBI taxonomy Id: 456900
Other names: C. costatus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC62_00074	ALC62_02297	A0A151K1V9	A0A195D154	CCHC-type domain-containing protein.	Serine/arginine-rich splicing factor 2.	0.930
ALC62_00074	ALC62_03827	A0A151K1V9	A0A151K2Y8	CCHC-type domain-containing protein.	Transformer-2 protein like protein beta.	0.679
ALC62_00074	ALC62_04134	A0A151K1V9	A0A151IKH9	CCHC-type domain-containing protein.	Splicing factor U2af 38 kDa subunit.	0.726
ALC62_00074	ALC62_06644	A0A151K1V9	A0A151IIS2	CCHC-type domain-containing protein.	Serine/threonine-protein kinase SRPK1.	0.679
ALC62_00074	ALC62_06697	A0A151K1V9	A0A151IIG6	CCHC-type domain-containing protein.	Uncharacterized protein.	0.714
ALC62_00074	ALC62_08367	A0A151K1V9	A0A151IH31	CCHC-type domain-containing protein.	Uncharacterized protein.	0.714
ALC62_00074	ALC62_10166	A0A151K1V9	A0A195CE14	CCHC-type domain-containing protein.	Nucleolysin TIA-1 isoform p40.	0.745
ALC62_00074	ALC62_10169	A0A151K1V9	A0A195CEC1	CCHC-type domain-containing protein.	Nucleolysin TIA-1.	0.745
ALC62_00074	ALC62_12963	A0A151K1V9	A0A195C636	CCHC-type domain-containing protein.	Serine-arginine protein 55.	0.804
ALC62_00074	ALC62_15092	A0A151K1V9	A0A151I827	CCHC-type domain-containing protein.	Uncharacterized protein.	0.804
ALC62_00074	ALC62_15252	A0A151K1V9	A0A151I7W5	CCHC-type domain-containing protein.	Splicing factor U2af 38 kDa subunit.	0.726
ALC62_00074	ALC62_15822	A0A151K1V9	A0A195BXT0	CCHC-type domain-containing protein.	U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1.	0.726
ALC62_00074	ALC62_15885	A0A151K1V9	A0A195BY59	CCHC-type domain-containing protein.	Putative splicing factor, arginine/serine-rich 7.	0.780
ALC62_02297	ALC62_00074	A0A195D154	A0A151K1V9	Serine/arginine-rich splicing factor 2.	CCHC-type domain-containing protein.	0.930
ALC62_02297	ALC62_03827	A0A195D154	A0A151K2Y8	Serine/arginine-rich splicing factor 2.	Transformer-2 protein like protein beta.	0.974
ALC62_02297	ALC62_04134	A0A195D154	A0A151IKH9	Serine/arginine-rich splicing factor 2.	Splicing factor U2af 38 kDa subunit.	0.855
ALC62_02297	ALC62_06059	A0A195D154	A0A195CRS2	Serine/arginine-rich splicing factor 2.	RNA-binding protein 1.	0.993
ALC62_02297	ALC62_06644	A0A195D154	A0A151IIS2	Serine/arginine-rich splicing factor 2.	Serine/threonine-protein kinase SRPK1.	0.942
ALC62_02297	ALC62_06697	A0A195D154	A0A151IIG6	Serine/arginine-rich splicing factor 2.	Uncharacterized protein.	0.794
ALC62_02297	ALC62_06718	A0A195D154	A0A151III9	Serine/arginine-rich splicing factor 2.	Serine/arginine-rich splicing factor 7.	0.969