(21 nodes) snRNA binding network (Cyphomyrmex costatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALC62_13401	U4/U6 small nuclear ribonucleoprotein Prp4. (524 aa)
	ALC62_07343	Heterogeneous nuclear ribonucleoprotein L. (210 aa)
	ALC62_07345	Heterogeneous nuclear ribonucleoprotein L. (376 aa)
	ALC62_06731	U7 snRNA-associated Sm-like protein LSm11. (215 aa)
	ALC62_05900	Putative U2 small nuclear ribonucleoprotein A. (246 aa)
	ALC62_04777	Leucine-rich repeat-containing protein 51. (202 aa)
	ALC62_04782	Tr-type G domain-containing protein. (981 aa)
	ALC62_13361	U11/U12 small nuclear ribonucleoprotein 35 kDa protein. (181 aa)
	ALC62_09144	U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family. (175 aa)
	ALC62_15200	U7 snRNA-associated Sm-like protein LSm10. (97 aa)
	ALC62_14189	Protein HEXIM1. (401 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (125 aa)
	ALC62_02391	Leucine-rich repeat-containing protein C10orf11 like protein. (610 aa)
	ALC62_02548	7SK snRNA methylphosphate capping enzyme. (683 aa)
	ALC62_11365	U1 small nuclear ribonucleoprotein 70 kDa. (405 aa)
	ALC62_12692	Importin-7. (1059 aa)
	ALC62_13207	U2 small nuclear ribonucleoprotein B. (231 aa)
	ALC62_07748	Snurportin-1. (413 aa)
	ALC62_11332	Pre-mRNA-splicing factor RBM22. (449 aa)
	ALC62_11386	Pre-mRNA-processing-splicing factor 8. (2372 aa)
	ALC62_12156	Splicing factor 3B subunit 3. (1217 aa)

Your Current Organism:

Cyphomyrmex costatus

NCBI taxonomy Id: 456900
Other names: C. costatus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC62_02391	ALC62_04782	A0A195D1I6	A0A195CTJ3	Leucine-rich repeat-containing protein C10orf11 like protein.	Tr-type G domain-containing protein.	0.917
ALC62_02391	ALC62_07748	A0A195D1I6	A0A195CLG9	Leucine-rich repeat-containing protein C10orf11 like protein.	Snurportin-1.	0.431
ALC62_02391	ALC62_09144	A0A195D1I6	A0A195CI27	Leucine-rich repeat-containing protein C10orf11 like protein.	U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.	0.787
ALC62_02391	ALC62_11332	A0A195D1I6	A0A195CCN8	Leucine-rich repeat-containing protein C10orf11 like protein.	Pre-mRNA-splicing factor RBM22.	0.731
ALC62_02391	ALC62_11365	A0A195D1I6	A0A195CAY1	Leucine-rich repeat-containing protein C10orf11 like protein.	U1 small nuclear ribonucleoprotein 70 kDa.	0.768
ALC62_02391	ALC62_11386	A0A195D1I6	A0A195CBG6	Leucine-rich repeat-containing protein C10orf11 like protein.	Pre-mRNA-processing-splicing factor 8.	0.905
ALC62_02391	ALC62_12156	A0A195D1I6	A0A151IBP3	Leucine-rich repeat-containing protein C10orf11 like protein.	Splicing factor 3B subunit 3.	0.964
ALC62_02391	ALC62_13207	A0A195D1I6	A0A195C7L5	Leucine-rich repeat-containing protein C10orf11 like protein.	U2 small nuclear ribonucleoprotein B.	0.919
ALC62_02391	ALC62_13361	A0A195D1I6	A0A195C6W7	Leucine-rich repeat-containing protein C10orf11 like protein.	U11/U12 small nuclear ribonucleoprotein 35 kDa protein.	0.768
ALC62_02391	ALC62_13401	A0A195D1I6	A0A195C712	Leucine-rich repeat-containing protein C10orf11 like protein.	U4/U6 small nuclear ribonucleoprotein Prp4.	0.696
ALC62_02391	ALC62_15200	A0A195D1I6	A0A151K2W0	Leucine-rich repeat-containing protein C10orf11 like protein.	U7 snRNA-associated Sm-like protein LSm10.	0.902
ALC62_02391	LSM4	A0A195D1I6	A0A195CUV3	Leucine-rich repeat-containing protein C10orf11 like protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.892
ALC62_02548	ALC62_13401	A0A195D258	A0A195C712	7SK snRNA methylphosphate capping enzyme.	U4/U6 small nuclear ribonucleoprotein Prp4.	0.679
ALC62_02548	ALC62_14189	A0A195D258	A0A195C541	7SK snRNA methylphosphate capping enzyme.	Protein HEXIM1.	0.818
ALC62_02548	LSM4	A0A195D258	A0A195CUV3	7SK snRNA methylphosphate capping enzyme.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.501
ALC62_04777	ALC62_04782	A0A195CTJ0	A0A195CTJ3	Leucine-rich repeat-containing protein 51.	Tr-type G domain-containing protein.	0.917
ALC62_04777	ALC62_07748	A0A195CTJ0	A0A195CLG9	Leucine-rich repeat-containing protein 51.	Snurportin-1.	0.431
ALC62_04777	ALC62_09144	A0A195CTJ0	A0A195CI27	Leucine-rich repeat-containing protein 51.	U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.	0.787
ALC62_04777	ALC62_11332	A0A195CTJ0	A0A195CCN8	Leucine-rich repeat-containing protein 51.	Pre-mRNA-splicing factor RBM22.	0.731
ALC62_04777	ALC62_11365	A0A195CTJ0	A0A195CAY1	Leucine-rich repeat-containing protein 51.	U1 small nuclear ribonucleoprotein 70 kDa.	0.768