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LSM5 LSM5 ALC62_14394 ALC62_14394 ALC62_14424 ALC62_14424 ALC62_14425 ALC62_14425 ALC62_14924 ALC62_14924 ALC62_14074 ALC62_14074 ALC62_14689 ALC62_14689 ALC62_14378 ALC62_14378 ALC62_13970 ALC62_13970 ALC62_14179 ALC62_14179 ALC62_14189 ALC62_14189 ALC62_13401 ALC62_13401 ALC62_13207 ALC62_13207 ALC62_12577 ALC62_12577 ALC62_11293 ALC62_11293 ALC62_11365 ALC62_11365 ALC62_11386 ALC62_11386 ALC62_10793 ALC62_10793 ALC62_10514 ALC62_10514 ALC62_11324 ALC62_11324 ALC62_00390 ALC62_00390 ALC62_03413 ALC62_03413 ALC62_03658 ALC62_03658 LSM4 LSM4 ALC62_04782 ALC62_04782 ALC62_04755 ALC62_04755 ALC62_05699 ALC62_05699 ALC62_05497 ALC62_05497 ALC62_05900 ALC62_05900 LSM8 LSM8 ALC62_06827 ALC62_06827 ALC62_06731 ALC62_06731 ALC62_07345 ALC62_07345 ALC62_07343 ALC62_07343 ALC62_07461 ALC62_07461 ALC62_08212 ALC62_08212 ALC62_08116 ALC62_08116 ALC62_09144 ALC62_09144 ALC62_09810 ALC62_09810 ALC62_09423 ALC62_09423 ALC62_10165 ALC62_10165 ALC62_15272 ALC62_15272 ALC62_15281 ALC62_15281 ALC62_15058 ALC62_15058 ALC62_15056 ALC62_15056 ALC62_15076 ALC62_15076 LSM3 LSM3 ALC62_12156 ALC62_12156 ALC62_11976 ALC62_11976 ALC62_11525 ALC62_11525 ALC62_09947 ALC62_09947 ALC62_08605 ALC62_08605 ALC62_06857 ALC62_06857 ALC62_05241 ALC62_05241 ALC62_05256 ALC62_05256 ALC62_03560 ALC62_03560 ALC62_03081 ALC62_03081 ALC62_01961 ALC62_01961 ALC62_01832 ALC62_01832 ALC62_00635 ALC62_00635
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (90 aa)
ALC62_14394Activating signal cointegrator 1 complex subunit 3. (2097 aa)
ALC62_14424Ribosomal_L7Ae domain-containing protein. (114 aa)
ALC62_14425Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
ALC62_14924Uncharacterized protein C20orf4 like protein. (373 aa)
ALC62_14074LIN1-like protein. (337 aa)
ALC62_14689Pre-mRNA-processing factor 6. (931 aa)
ALC62_14378U3 small nucleolar RNA-associated protein 18 like protein. (532 aa)
ALC62_13970Small nuclear ribonucleoprotein Sm D3. (142 aa)
ALC62_14179U4/U6.U5 tri-snRNP-associated protein 1. (738 aa)
ALC62_14189Protein HEXIM1. (401 aa)
ALC62_13401U4/U6 small nuclear ribonucleoprotein Prp4. (524 aa)
ALC62_13207U2 small nuclear ribonucleoprotein B. (231 aa)
ALC62_12577RNA-binding protein 40. (355 aa)
ALC62_11293Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
ALC62_11365U1 small nuclear ribonucleoprotein 70 kDa. (405 aa)
ALC62_11386Pre-mRNA-processing-splicing factor 8. (2372 aa)
ALC62_10793Luc7-like protein 3. (367 aa)
ALC62_10514Uncharacterized protein. (2133 aa)
ALC62_11324Nucleolysin TIAR. (393 aa)
ALC62_00390U4/U6 small nuclear ribonucleoprotein Prp31. (500 aa)
ALC62_03413Splicing factor 3A subunit 1. (769 aa)
ALC62_03658Splicing factor 3B subunit 1. (1303 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (125 aa)
ALC62_04782Tr-type G domain-containing protein. (981 aa)
ALC62_04755Splicing factor 3B subunit 4. (410 aa)
ALC62_05699Pre-mRNA-splicing factor 18. (335 aa)
ALC62_05497Splicing factor 3B subunit 2. (676 aa)
ALC62_05900Putative U2 small nuclear ribonucleoprotein A. (246 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
ALC62_06827Pre-mRNA-processing factor 39. (981 aa)
ALC62_06731U7 snRNA-associated Sm-like protein LSm11. (215 aa)
ALC62_07345Heterogeneous nuclear ribonucleoprotein L. (376 aa)
ALC62_07343Heterogeneous nuclear ribonucleoprotein L. (210 aa)
ALC62_07461Uncharacterized protein. (578 aa)
ALC62_08212Small nuclear ribonucleoprotein F; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
ALC62_08116Death-inducer obliterator 1. (2271 aa)
ALC62_09144U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family. (175 aa)
ALC62_09810Small nuclear ribonucleoprotein-associated protein. (208 aa)
ALC62_09423RNA-binding motif protein, X-linked 2. (144 aa)
ALC62_10165U4/U6 small nuclear ribonucleoprotein Prp3. (1337 aa)
ALC62_15272Small nuclear ribonucleoprotein Sm D2. (134 aa)
ALC62_15281U6 snRNA-associated Sm-like protein LSm7. (117 aa)
ALC62_15058HIV Tat-specific factor 1 like protein. (243 aa)
ALC62_15056HIV Tat-specific factor 1. (235 aa)
ALC62_15076Zinc finger matrin-type protein 5. (166 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (100 aa)
ALC62_12156Splicing factor 3B subunit 3. (1217 aa)
ALC62_11976WW domain-binding protein 4. (327 aa)
ALC62_11525CDK5RAP1-like protein. (1355 aa)
ALC62_09947Splicing factor 3A subunit 2. (273 aa)
ALC62_08605Putative small nuclear ribonucleoprotein G. (39 aa)
ALC62_06857Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (85 aa)
ALC62_05241PHD finger-like domain-containing protein 5A. (110 aa)
ALC62_05256Putative RNA-binding protein Luc7-like 1. (345 aa)
ALC62_03560Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (116 aa)
ALC62_03081Zinc finger matrin-type protein 2. (194 aa)
ALC62_01961U6 snRNA-associated Sm-like protein LSm6; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (79 aa)
ALC62_01832Pre-mRNA branch site p14-like protein. (114 aa)
ALC62_00635Splicing factor 3A subunit 3. (500 aa)
Your Current Organism:
Cyphomyrmex costatus
NCBI taxonomy Id: 456900
Other names: C. costatus
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