(8 nodes) U1 snRNA binding network (Cyphomyrmex costatus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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Your Input:
	ALC62_09144	U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family. (175 aa)
	ALC62_13207	U2 small nuclear ribonucleoprotein B. (231 aa)
	ALC62_12692	Importin-7. (1059 aa)
	ALC62_11365	U1 small nuclear ribonucleoprotein 70 kDa. (405 aa)
	ALC62_11386	Pre-mRNA-processing-splicing factor 8. (2372 aa)
	ALC62_07748	Snurportin-1. (413 aa)
	ALC62_07343	Heterogeneous nuclear ribonucleoprotein L. (210 aa)
	ALC62_07345	Heterogeneous nuclear ribonucleoprotein L. (376 aa)

Your Current Organism:

Cyphomyrmex costatus

NCBI taxonomy Id: 456900
Other names: C. costatus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC62_07343	ALC62_11365	A0A195CMB5	A0A195CAY1	Heterogeneous nuclear ribonucleoprotein L.	U1 small nuclear ribonucleoprotein 70 kDa.	0.623
ALC62_07345	ALC62_11365	A0A195CMD0	A0A195CAY1	Heterogeneous nuclear ribonucleoprotein L.	U1 small nuclear ribonucleoprotein 70 kDa.	0.623
ALC62_07748	ALC62_12692	A0A195CLG9	A0A195C7M6	Snurportin-1.	Importin-7.	0.439
ALC62_07748	ALC62_13207	A0A195CLG9	A0A195C7L5	Snurportin-1.	U2 small nuclear ribonucleoprotein B.	0.502
ALC62_09144	ALC62_11365	A0A195CI27	A0A195CAY1	U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.	U1 small nuclear ribonucleoprotein 70 kDa.	0.984
ALC62_09144	ALC62_11386	A0A195CI27	A0A195CBG6	U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.	Pre-mRNA-processing-splicing factor 8.	0.893
ALC62_09144	ALC62_13207	A0A195CI27	A0A195C7L5	U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.	U2 small nuclear ribonucleoprotein B.	0.991
ALC62_11365	ALC62_07343	A0A195CAY1	A0A195CMB5	U1 small nuclear ribonucleoprotein 70 kDa.	Heterogeneous nuclear ribonucleoprotein L.	0.623
ALC62_11365	ALC62_07345	A0A195CAY1	A0A195CMD0	U1 small nuclear ribonucleoprotein 70 kDa.	Heterogeneous nuclear ribonucleoprotein L.	0.623
ALC62_11365	ALC62_09144	A0A195CAY1	A0A195CI27	U1 small nuclear ribonucleoprotein 70 kDa.	U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.	0.984
ALC62_11365	ALC62_11386	A0A195CAY1	A0A195CBG6	U1 small nuclear ribonucleoprotein 70 kDa.	Pre-mRNA-processing-splicing factor 8.	0.905
ALC62_11365	ALC62_13207	A0A195CAY1	A0A195C7L5	U1 small nuclear ribonucleoprotein 70 kDa.	U2 small nuclear ribonucleoprotein B.	0.983
ALC62_11386	ALC62_09144	A0A195CBG6	A0A195CI27	Pre-mRNA-processing-splicing factor 8.	U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.	0.893
ALC62_11386	ALC62_11365	A0A195CBG6	A0A195CAY1	Pre-mRNA-processing-splicing factor 8.	U1 small nuclear ribonucleoprotein 70 kDa.	0.905
ALC62_11386	ALC62_13207	A0A195CBG6	A0A195C7L5	Pre-mRNA-processing-splicing factor 8.	U2 small nuclear ribonucleoprotein B.	0.954
ALC62_12692	ALC62_07748	A0A195C7M6	A0A195CLG9	Importin-7.	Snurportin-1.	0.439
ALC62_13207	ALC62_07748	A0A195C7L5	A0A195CLG9	U2 small nuclear ribonucleoprotein B.	Snurportin-1.	0.502
ALC62_13207	ALC62_09144	A0A195C7L5	A0A195CI27	U2 small nuclear ribonucleoprotein B.	U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.	0.991
ALC62_13207	ALC62_11365	A0A195C7L5	A0A195CAY1	U2 small nuclear ribonucleoprotein B.	U1 small nuclear ribonucleoprotein 70 kDa.	0.983
ALC62_13207	ALC62_11386	A0A195C7L5	A0A195CBG6	U2 small nuclear ribonucleoprotein B.	Pre-mRNA-processing-splicing factor 8.	0.954