(10 nodes) P-body assembly network (Cyphomyrmex costatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALC62_01918	Putative ATP-dependent RNA helicase me31b; Belongs to the DEAD box helicase family. (444 aa)
	ALC62_09744	Roquin. (991 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (100 aa)
	ALC62_06551	Survival motor neuron protein. (204 aa)
	ALC62_08167	Protein LSM14 like protein B. (562 aa)
	ALC62_11699	Enhancer of mRNA-decapping protein 3. (468 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (138 aa)
	ALC62_01441	Enhancer of mRNA-decapping protein 4. (1051 aa)
	ALC62_02936	Protein PAT1 like protein 1. (658 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (125 aa)

Your Current Organism:

Cyphomyrmex costatus

NCBI taxonomy Id: 456900
Other names: C. costatus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC62_01441	ALC62_01918	A0A195D453	A0A151INQ9	Enhancer of mRNA-decapping protein 4.	Putative ATP-dependent RNA helicase me31b; Belongs to the DEAD box helicase family.	0.965
ALC62_01441	ALC62_02936	A0A195D453	A0A195CZT6	Enhancer of mRNA-decapping protein 4.	Protein PAT1 like protein 1.	0.981
ALC62_01441	ALC62_08167	A0A195D453	A0A195CJN4	Enhancer of mRNA-decapping protein 4.	Protein LSM14 like protein B.	0.700
ALC62_01441	ALC62_11699	A0A195D453	A0A195C9A7	Enhancer of mRNA-decapping protein 4.	Enhancer of mRNA-decapping protein 3.	0.981
ALC62_01441	LSM1	A0A195D453	A0A151ILB4	Enhancer of mRNA-decapping protein 4.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.853
ALC62_01441	LSM3	A0A195D453	A0A151IAE0	Enhancer of mRNA-decapping protein 4.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.736
ALC62_01441	LSM4	A0A195D453	A0A195CUV3	Enhancer of mRNA-decapping protein 4.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.814
ALC62_01918	ALC62_01441	A0A151INQ9	A0A195D453	Putative ATP-dependent RNA helicase me31b; Belongs to the DEAD box helicase family.	Enhancer of mRNA-decapping protein 4.	0.965
ALC62_01918	ALC62_02936	A0A151INQ9	A0A195CZT6	Putative ATP-dependent RNA helicase me31b; Belongs to the DEAD box helicase family.	Protein PAT1 like protein 1.	0.997
ALC62_01918	ALC62_06551	A0A151INQ9	A0A195CPW5	Putative ATP-dependent RNA helicase me31b; Belongs to the DEAD box helicase family.	Survival motor neuron protein.	0.698
ALC62_01918	ALC62_08167	A0A151INQ9	A0A195CJN4	Putative ATP-dependent RNA helicase me31b; Belongs to the DEAD box helicase family.	Protein LSM14 like protein B.	0.996
ALC62_01918	ALC62_09744	A0A151INQ9	A0A151IF38	Putative ATP-dependent RNA helicase me31b; Belongs to the DEAD box helicase family.	Roquin.	0.498
ALC62_01918	ALC62_11699	A0A151INQ9	A0A195C9A7	Putative ATP-dependent RNA helicase me31b; Belongs to the DEAD box helicase family.	Enhancer of mRNA-decapping protein 3.	0.998
ALC62_01918	LSM1	A0A151INQ9	A0A151ILB4	Putative ATP-dependent RNA helicase me31b; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.997
ALC62_01918	LSM3	A0A151INQ9	A0A151IAE0	Putative ATP-dependent RNA helicase me31b; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.871
ALC62_01918	LSM4	A0A151INQ9	A0A195CUV3	Putative ATP-dependent RNA helicase me31b; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.977
ALC62_02936	ALC62_01441	A0A195CZT6	A0A195D453	Protein PAT1 like protein 1.	Enhancer of mRNA-decapping protein 4.	0.981
ALC62_02936	ALC62_01918	A0A195CZT6	A0A151INQ9	Protein PAT1 like protein 1.	Putative ATP-dependent RNA helicase me31b; Belongs to the DEAD box helicase family.	0.997
ALC62_02936	ALC62_08167	A0A195CZT6	A0A195CJN4	Protein PAT1 like protein 1.	Protein LSM14 like protein B.	0.789
ALC62_02936	ALC62_09744	A0A195CZT6	A0A151IF38	Protein PAT1 like protein 1.	Roquin.	0.602