STRINGSTRING
ALC62_00390 ALC62_00390 ALC62_00376 ALC62_00376 ALC62_14924 ALC62_14924 ALC62_14394 ALC62_14394 LSM5 LSM5 ALC62_00635 ALC62_00635 ALC62_01027 ALC62_01027 ALC62_01961 ALC62_01961 ALC62_03560 ALC62_03560 ALC62_03806 ALC62_03806 ALC62_06857 ALC62_06857 ALC62_08605 ALC62_08605 ALC62_11976 ALC62_11976 ALC62_12156 ALC62_12156 LSM3 LSM3 ALC62_15056 ALC62_15056 ALC62_15058 ALC62_15058 ALC62_15281 ALC62_15281 ALC62_15272 ALC62_15272 ALC62_14074 ALC62_14074 ALC62_14179 ALC62_14179 ALC62_13207 ALC62_13207 ALC62_12577 ALC62_12577 ALC62_11293 ALC62_11293 ALC62_11386 ALC62_11386 ALC62_10514 ALC62_10514 ALC62_11254 ALC62_11254 ALC62_11324 ALC62_11324 ALC62_10165 ALC62_10165 ALC62_09810 ALC62_09810 ALC62_08116 ALC62_08116 ALC62_08212 ALC62_08212 ALC62_07461 ALC62_07461 LSM8 LSM8 ALC62_05900 ALC62_05900 ALC62_04755 ALC62_04755 LSM4 LSM4 ALC62_01496 ALC62_01496
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ALC62_00390U4/U6 small nuclear ribonucleoprotein Prp31. (500 aa)
ALC62_00376Uncharacterized protein. (267 aa)
ALC62_14924Uncharacterized protein C20orf4 like protein. (373 aa)
ALC62_14394Activating signal cointegrator 1 complex subunit 3. (2097 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (90 aa)
ALC62_00635Splicing factor 3A subunit 3. (500 aa)
ALC62_01027Uncharacterized protein. (249 aa)
ALC62_01961U6 snRNA-associated Sm-like protein LSm6; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (79 aa)
ALC62_03560Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (116 aa)
ALC62_03806Uncharacterized protein. (1315 aa)
ALC62_06857Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (85 aa)
ALC62_08605Putative small nuclear ribonucleoprotein G. (39 aa)
ALC62_11976WW domain-binding protein 4. (327 aa)
ALC62_12156Splicing factor 3B subunit 3. (1217 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (100 aa)
ALC62_15056HIV Tat-specific factor 1. (235 aa)
ALC62_15058HIV Tat-specific factor 1 like protein. (243 aa)
ALC62_15281U6 snRNA-associated Sm-like protein LSm7. (117 aa)
ALC62_15272Small nuclear ribonucleoprotein Sm D2. (134 aa)
ALC62_14074LIN1-like protein. (337 aa)
ALC62_14179U4/U6.U5 tri-snRNP-associated protein 1. (738 aa)
ALC62_13207U2 small nuclear ribonucleoprotein B. (231 aa)
ALC62_12577RNA-binding protein 40. (355 aa)
ALC62_11293Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
ALC62_11386Pre-mRNA-processing-splicing factor 8. (2372 aa)
ALC62_10514Uncharacterized protein. (2133 aa)
ALC62_11254tRNA guanosine-2'-O-methyltransferase TRM13 like protein. (384 aa)
ALC62_11324Nucleolysin TIAR. (393 aa)
ALC62_10165U4/U6 small nuclear ribonucleoprotein Prp3. (1337 aa)
ALC62_09810Small nuclear ribonucleoprotein-associated protein. (208 aa)
ALC62_08116Death-inducer obliterator 1. (2271 aa)
ALC62_08212Small nuclear ribonucleoprotein F; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
ALC62_07461Uncharacterized protein. (578 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
ALC62_05900Putative U2 small nuclear ribonucleoprotein A. (246 aa)
ALC62_04755Splicing factor 3B subunit 4. (410 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (125 aa)
ALC62_01496RF_PROK_I domain-containing protein. (163 aa)
Your Current Organism:
Cyphomyrmex costatus
NCBI taxonomy Id: 456900
Other names: C. costatus
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