(77 nodes) Ribonucleoprotein granule network (Cyphomyrmex costatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALC62_06202	Uncharacterized protein. (70 aa)
	ALC62_10764	Tudor domain-containing protein. (214 aa)
	ALC62_10940	HTH_48 domain-containing protein. (103 aa)
	ALC62_11081	Nanos like protein 1; Belongs to the nanos family. (243 aa)
	ALC62_11473	Uncharacterized protein. (197 aa)
	ALC62_12090	Uncharacterized protein. (894 aa)
	ALC62_13497	Eukaryotic translation initiation factor 4E transporter. (1350 aa)
	ALC62_14291	DIS3-like exonuclease 2; Belongs to the RNR ribonuclease family. (945 aa)
	ALC62_14613	Protein argonaute-2. (860 aa)
	ALC62_14624	mRNA-decapping enzyme 2. (251 aa)
	ALC62_15307	Ras GTPase-activating protein-binding protein 1. (638 aa)
	ALC62_15706	Fragile X mental retardation syndrome-related protein 1. (594 aa)
	ALC62_15735	mRNA-decapping enzyme 2. (127 aa)
	ALC62_15733	mRNA-decapping enzyme 2. (402 aa)
	ALC62_02528	Putative ATP-dependent RNA helicase spindle-E. (1363 aa)
	ALC62_02342	Uncharacterized protein. (717 aa)
	ALC62_06200	RNA-binding protein 9. (373 aa)
	ALC62_06203	Uncharacterized protein. (217 aa)
	ALC62_06003	RNA-binding protein MEX3B. (420 aa)
	ALC62_05692	Heterogeneous nuclear ribonucleoprotein Q. (709 aa)
	ALC62_04867	2-oxoglutarate and iron-dependent oxygenase domain-containing protein 1. (562 aa)
	ALC62_08813	mRNA-decapping enzyme 2. (214 aa)
	ALC62_04758	mRNA-decapping enzyme 1A. (452 aa)
	ALC62_02206	FAST kinase domain-containing protein 5. (668 aa)
	ALC62_02242	Tudor domain-containing protein. (204 aa)
	PAN3	PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] (662 aa)
	ALC62_11699	Enhancer of mRNA-decapping protein 3. (468 aa)
	ALC62_11992	CHK domain-containing protein. (2447 aa)
	ALC62_14071	E3 ubiquitin-protein ligase UBR4. (5194 aa)
	ALC62_13752	Polymerase delta-interacting protein 3. (422 aa)
	ALC62_13732	Small ubiquitin-related modifier. (136 aa)
	ALC62_14896	Uncharacterized protein. (1181 aa)
	ALC62_05059	Protein argonaute-2; Belongs to the argonaute family. (929 aa)
	ALC62_09139	Pumilio like protein 2. (588 aa)
	ALC62_12041	ATP-dependent RNA helicase bel; Belongs to the DEAD box helicase family. (711 aa)
	ALC62_02735	Importin subunit beta-1. (877 aa)
	ALC62_02936	Protein PAT1 like protein 1. (658 aa)
	ALC62_03689	Proline-rich nuclear receptor coactivator 2. (166 aa)
	ALC62_05200	Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1. (493 aa)
	ALC62_05816	Putative ATP-dependent RNA helicase YTHDC2. (1153 aa)
	ALC62_06272	DNA methyltransferase like protein pmt1; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (275 aa)
	ALC62_07769	Sex-lethal like protein. (320 aa)
	ALC62_09744	Roquin. (991 aa)
	ALC62_09920	Peptidylprolyl isomerase. (445 aa)
	ALC62_09938	Tudor domain-containing protein 7. (1097 aa)
	ALC62_09933	Uncharacterized protein. (474 aa)
	ALC62_09971	Eukaryotic initiation factor 4A-II; Belongs to the DEAD box helicase family. (418 aa)
	ALC62_09937	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
	ALC62_09936	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
	ALC62_10025	mRNA-decapping enzyme 2. (202 aa)
	ALC62_10422	Heterogeneous nuclear ribonucleoprotein 27C. (400 aa)
	ALC62_10510	Uncharacterized protein. (131 aa)
	ALC62_07585	Piwi-like protein 1; Belongs to the argonaute family. (923 aa)
	ALC62_07720	Regulator of nonsense transcripts 1. (1120 aa)
	ALC62_09136	Maternal protein pumilio. (810 aa)
	ALC62_15542	Y-box factor like protein. (333 aa)
	ALC62_14841	Uncharacterized protein. (151 aa)
	ALC62_15548	Cell differentiation protein RCD1 like protein. (508 aa)
	ALC62_06889	Zinc finger CCHC domain-containing protein 13. (619 aa)
	ALC62_01918	Putative ATP-dependent RNA helicase me31b; Belongs to the DEAD box helicase family. (444 aa)
	ALC62_02010	Putative RNA helicase armi. (1206 aa)
	ALC62_02008	Maternal protein tudor. (2618 aa)
	ALC62_02762	Uncharacterized protein F58A4.6. (275 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (138 aa)
	ALC62_01577	CUGBP Elav-like family member 2. (435 aa)
	ALC62_01441	Enhancer of mRNA-decapping protein 4. (1051 aa)
	ALC62_00956	RNA pseudouridylate synthase domain-containing protein 4. (372 aa)
	ALC62_00509	RING finger protein 17. (1441 aa)
	ALC62_00503	B box-type domain-containing protein. (325 aa)
	ALC62_00345	PAB-dependent poly(A)-specific ribonuclease subunit 2. (1297 aa)
	ALC62_00225	Uncharacterized protein. (117 aa)
	ALC62_03996	Putative odorant receptor 85d. (127 aa)
	ALC62_06737	Putative tRNA pseudouridine synthase 2. (318 aa)
	ALC62_02341	Tudor domain-containing protein 5. (1396 aa)
	ALC62_02461	Maternal protein exuperantia. (416 aa)
	ALC62_07918	Putative ATP-dependent RNA helicase spindle-E. (1210 aa)
	ALC62_04426	AN1-type zinc finger protein 1. (270 aa)

Your Current Organism:

Cyphomyrmex costatus

NCBI taxonomy Id: 456900
Other names: C. costatus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC62_00225	ALC62_01918	A0A195D8L5	A0A151INQ9	Uncharacterized protein.	Putative ATP-dependent RNA helicase me31b; Belongs to the DEAD box helicase family.	0.540
ALC62_00345	ALC62_01918	A0A195D8A5	A0A151INQ9	PAB-dependent poly(A)-specific ribonuclease subunit 2.	Putative ATP-dependent RNA helicase me31b; Belongs to the DEAD box helicase family.	0.577
ALC62_00345	ALC62_04758	A0A195D8A5	A0A195CV03	PAB-dependent poly(A)-specific ribonuclease subunit 2.	mRNA-decapping enzyme 1A.	0.403
ALC62_00345	ALC62_07769	A0A195D8A5	A0A151IHF6	PAB-dependent poly(A)-specific ribonuclease subunit 2.	Sex-lethal like protein.	0.574
ALC62_00345	ALC62_09933	A0A195D8A5	A0A151IER0	PAB-dependent poly(A)-specific ribonuclease subunit 2.	Uncharacterized protein.	0.961
ALC62_00345	ALC62_09936	A0A195D8A5	A0A151IEM4	PAB-dependent poly(A)-specific ribonuclease subunit 2.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.961
ALC62_00345	ALC62_09937	A0A195D8A5	A0A151IEQ6	PAB-dependent poly(A)-specific ribonuclease subunit 2.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.961
ALC62_00345	ALC62_09971	A0A195D8A5	A0A151IEQ7	PAB-dependent poly(A)-specific ribonuclease subunit 2.	Eukaryotic initiation factor 4A-II; Belongs to the DEAD box helicase family.	0.759
ALC62_00345	ALC62_14291	A0A195D8A5	A0A151I8T7	PAB-dependent poly(A)-specific ribonuclease subunit 2.	DIS3-like exonuclease 2; Belongs to the RNR ribonuclease family.	0.682
ALC62_00345	ALC62_15548	A0A195D8A5	A0A195BZ07	PAB-dependent poly(A)-specific ribonuclease subunit 2.	Cell differentiation protein RCD1 like protein.	0.449
ALC62_00345	LSM1	A0A195D8A5	A0A151ILB4	PAB-dependent poly(A)-specific ribonuclease subunit 2.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.447
ALC62_00345	PAN3	A0A195D8A5	A0A195CAS4	PAB-dependent poly(A)-specific ribonuclease subunit 2.	PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...]	0.999
ALC62_00503	ALC62_02010	A0A195D7T7	A0A151INI7	B box-type domain-containing protein.	Putative RNA helicase armi.	0.562
ALC62_00503	ALC62_02528	A0A195D7T7	A0A195D232	B box-type domain-containing protein.	Putative ATP-dependent RNA helicase spindle-E.	0.421
ALC62_00503	ALC62_07585	A0A195D7T7	A0A195CLN2	B box-type domain-containing protein.	Piwi-like protein 1; Belongs to the argonaute family.	0.658
ALC62_00503	ALC62_07918	A0A195D7T7	A0A195CMK3	B box-type domain-containing protein.	Putative ATP-dependent RNA helicase spindle-E.	0.421
ALC62_00509	ALC62_02010	A0A195D6K3	A0A151INI7	RING finger protein 17.	Putative RNA helicase armi.	0.562
ALC62_00509	ALC62_02528	A0A195D6K3	A0A195D232	RING finger protein 17.	Putative ATP-dependent RNA helicase spindle-E.	0.421
ALC62_00509	ALC62_07585	A0A195D6K3	A0A195CLN2	RING finger protein 17.	Piwi-like protein 1; Belongs to the argonaute family.	0.658
ALC62_00509	ALC62_07918	A0A195D6K3	A0A195CMK3	RING finger protein 17.	Putative ATP-dependent RNA helicase spindle-E.	0.421