STRINGSTRING
ALC62_11365 ALC62_11365 ALC62_09011 ALC62_09011 ALC62_03413 ALC62_03413 ALC62_03658 ALC62_03658 ALC62_09144 ALC62_09144 ALC62_09947 ALC62_09947 ALC62_11525 ALC62_11525
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ALC62_11365U1 small nuclear ribonucleoprotein 70 kDa. (405 aa)
ALC62_09011Uncharacterized protein. (366 aa)
ALC62_03413Splicing factor 3A subunit 1. (769 aa)
ALC62_03658Splicing factor 3B subunit 1. (1303 aa)
ALC62_09144U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family. (175 aa)
ALC62_09947Splicing factor 3A subunit 2. (273 aa)
ALC62_11525CDK5RAP1-like protein. (1355 aa)
Your Current Organism:
Cyphomyrmex costatus
NCBI taxonomy Id: 456900
Other names: C. costatus
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.