(19 nodes) Band 4.1 domain network (Cyphomyrmex costatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALC62_05493	FERM domain-containing protein 8. (452 aa)
	ALC62_07230	Protein expanded. (1298 aa)
	ALC62_05647	Talin-1. (2869 aa)
	ALC62_15089	Tyrosine-protein phosphatase non-receptor type 4. (871 aa)
	ALC62_14259	FERM domain-containing protein 5. (670 aa)
	ALC62_12779	Myosin-XV; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (4170 aa)
	ALC62_11948	Band 4.1-like protein 4A. (635 aa)
	ALC62_10055	FERM, RhoGEF and pleckstrin domain-containing protein 1. (1102 aa)
	ALC62_09208	Moesin/ezrin/radixin like protein 1. (605 aa)
	ALC62_06279	Tyrosine-protein kinase hopscotch. (1140 aa)
	ALC62_03240	Uncharacterized protein. (1653 aa)
	ALC62_13261	Myosin-I heavy chain; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2212 aa)
	ALC62_11320	Myosin-VIIa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2191 aa)
	ALC62_11674	Tyrosine-protein phosphatase non-receptor type 14. (425 aa)
	ALC62_08111	Merlin. (620 aa)
	ALC62_02536	Protein 4.1 like protein. (1951 aa)
	ALC62_03458	FERM and PDZ domain-containing protein 2. (2790 aa)
	ALC62_04239	E3 ubiquitin-protein ligase MYLIP. (506 aa)
	ALC62_04696	PH domain-containing protein. (713 aa)

Your Current Organism:

Cyphomyrmex costatus

NCBI taxonomy Id: 456900
Other names: C. costatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC62_02536	ALC62_05493	A0A195D0R1	A0A195CSX6	Protein 4.1 like protein.	FERM domain-containing protein 8.	0.400
ALC62_02536	ALC62_08111	A0A195D0R1	A0A195CJH1	Protein 4.1 like protein.	Merlin.	0.567
ALC62_02536	ALC62_09208	A0A195D0R1	A0A151IFQ4	Protein 4.1 like protein.	Moesin/ezrin/radixin like protein 1.	0.567
ALC62_02536	ALC62_11320	A0A195D0R1	A0A195CAT1	Protein 4.1 like protein.	Myosin-VIIa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.500
ALC62_02536	ALC62_11948	A0A195D0R1	A0A151IC14	Protein 4.1 like protein.	Band 4.1-like protein 4A.	0.676
ALC62_02536	ALC62_12779	A0A195D0R1	A0A151IB72	Protein 4.1 like protein.	Myosin-XV; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.500
ALC62_02536	ALC62_13261	A0A195D0R1	A0A195C5S9	Protein 4.1 like protein.	Myosin-I heavy chain; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.500
ALC62_02536	ALC62_14259	A0A195D0R1	A0A151I8X7	Protein 4.1 like protein.	FERM domain-containing protein 5.	0.658
ALC62_04239	ALC62_06279	A0A195CW48	A0A151IJH6	E3 ubiquitin-protein ligase MYLIP.	Tyrosine-protein kinase hopscotch.	0.433
ALC62_04239	ALC62_07230	A0A195CW48	A0A195CMI1	E3 ubiquitin-protein ligase MYLIP.	Protein expanded.	0.604
ALC62_04696	ALC62_05647	A0A195CVA7	A0A195CS98	PH domain-containing protein.	Talin-1.	0.561
ALC62_05493	ALC62_02536	A0A195CSX6	A0A195D0R1	FERM domain-containing protein 8.	Protein 4.1 like protein.	0.400
ALC62_05493	ALC62_05647	A0A195CSX6	A0A195CS98	FERM domain-containing protein 8.	Talin-1.	0.592
ALC62_05493	ALC62_14259	A0A195CSX6	A0A151I8X7	FERM domain-containing protein 8.	FERM domain-containing protein 5.	0.408
ALC62_05647	ALC62_04696	A0A195CS98	A0A195CVA7	Talin-1.	PH domain-containing protein.	0.561
ALC62_05647	ALC62_05493	A0A195CS98	A0A195CSX6	Talin-1.	FERM domain-containing protein 8.	0.592
ALC62_05647	ALC62_06279	A0A195CS98	A0A151IJH6	Talin-1.	Tyrosine-protein kinase hopscotch.	0.663
ALC62_05647	ALC62_08111	A0A195CS98	A0A195CJH1	Talin-1.	Merlin.	0.416
ALC62_05647	ALC62_09208	A0A195CS98	A0A151IFQ4	Talin-1.	Moesin/ezrin/radixin like protein 1.	0.416
ALC62_05647	ALC62_10055	A0A195CS98	A0A151IEJ2	Talin-1.	FERM, RhoGEF and pleckstrin domain-containing protein 1.	0.650