(94 nodes) mRNA Splicing - Major Pathway, and Helicase associated domain (HA2) Add an annotation network (Triticum urartu)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TRIUR3_08326	ATP-dependent RNA helicase Dhx29. (989 aa)
	TRIUR3_30517	Uncharacterized protein. (478 aa)
	TRIUR3_14474	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase. (815 aa)
	TRIUR3_09033	Cell division cycle 5-like protein. (1059 aa)
	TRIUR3_08891	Protein XAP5 CIRCADIAN TIMEKEEPER. (295 aa)
	TRIUR3_16851	Uncharacterized protein. (306 aa)
	TRIUR3_27483	Chaperone protein DnaJ. (266 aa)
	TRIUR3_19806	Poly [ADP-ribose] polymerase; Belongs to the disease resistance NB-LRR family. (1374 aa)
	TRIUR3_31034	Crooked neck-like protein 1. (616 aa)
	TRIUR3_20219	Uncharacterized protein. (595 aa)
	TRIUR3_18748	SNW domain-containing protein 1. (559 aa)
	TRIUR3_22015	Peptidylprolyl isomerase domain and WD repeat-containing protein 1. (648 aa)
	TRIUR3_13229	Tuftelin-interacting protein 11. (850 aa)
	TRIUR3_14944	COX assembly mitochondrial protein. (150 aa)
	TRIUR3_34550	Protein BUD31-like protein 2. (145 aa)
	TRIUR3_18392	Uncharacterized protein. (366 aa)
	TRIUR3_20828	ATP-dependent RNA helicase DHX8. (696 aa)
	TRIUR3_15857	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (1264 aa)
	TRIUR3_01054	Pre-mRNA-splicing factor 18. (257 aa)
	TRIUR3_18056	Uncharacterized protein. (255 aa)
	TRIUR3_29038	COX assembly mitochondrial protein. (83 aa)
	TRIUR3_31620	Putative ATP-dependent RNA helicase DHX36. (1064 aa)
	TRIUR3_02691	CWF19-like protein 2. (787 aa)
	TRIUR3_32417	Uncharacterized protein. (187 aa)
	TRIUR3_20747	Putative ATP-dependent RNA helicase YTHDC2. (1185 aa)
	TRIUR3_28420	PARP catalytic domain-containing protein. (415 aa)
	TRIUR3_24536	Cir_N domain-containing protein. (825 aa)
	TRIUR3_34206	Putative ATP-dependent RNA helicase DHX35. (807 aa)
	TRIUR3_31571	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16. (954 aa)
	TRIUR3_17924	Slu7 domain-containing protein. (535 aa)
	TRIUR3_23106	Uncharacterized protein. (276 aa)
	TRIUR3_01277	Uncharacterized protein. (302 aa)
	TRIUR3_26295	Pre-mRNA-splicing factor SYF1. (416 aa)
	TRIUR3_18892	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (584 aa)
	TRIUR3_16274	G patch domain-containing protein 8. (345 aa)
	TRIUR3_14134	Crooked neck-like protein 1. (573 aa)
	TRIUR3_17373	Uncharacterized protein. (369 aa)
	TRIUR3_20199	DEAD-box ATP-dependent RNA helicase 35A. (472 aa)
	TRIUR3_23156	Nkap_C domain-containing protein. (155 aa)
	TRIUR3_33757	Serine/arginine repetitive matrix protein 1. (915 aa)
	TRIUR3_01794	Pre-mRNA-splicing factor 18. (431 aa)
	TRIUR3_15773	ATP-dependent RNA helicase dhx8. (686 aa)
	TRIUR3_25388	Uncharacterized protein. (181 aa)
	TRIUR3_03577	Uncharacterized protein. (197 aa)
	TRIUR3_21631	Zinc finger CCCH domain-containing protein 40. (480 aa)
	TRIUR3_09943	Uncharacterized protein. (322 aa)
	TRIUR3_32157	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (480 aa)
	TRIUR3_32909	Uncharacterized protein. (123 aa)
	TRIUR3_17372	Uncharacterized protein. (237 aa)
	TRIUR3_09594	Zinc finger CCCH domain-containing protein 25. (167 aa)
	TRIUR3_09593	Zinc finger CCCH domain-containing protein 25. (330 aa)
	TRIUR3_07193	U-box domain-containing protein 72. (588 aa)
	TRIUR3_23441	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (164 aa)
	TRIUR3_28187	Pre-mRNA-processing factor 17. (570 aa)
	TRIUR3_25025	SNW domain-containing protein 1. (239 aa)
	TRIUR3_31511	Protein BUD31-like protein 1. (142 aa)
	TRIUR3_03601	Tuftelin-interacting protein 11. (803 aa)
	TRIUR3_10370	Pre-mRNA-splicing factor cwc22. (555 aa)
	TRIUR3_19993	Uncharacterized protein. (229 aa)
	TRIUR3_06239	Uncharacterized protein. (170 aa)
	TRIUR3_12270	Uncharacterized protein. (101 aa)
	TRIUR3_21867	Uncharacterized protein. (149 aa)
	TRIUR3_05198	Putative ATP-dependent RNA helicase DHX36. (430 aa)
	TRIUR3_00661	WD repeat-containing protein 25. (369 aa)
	TRIUR3_00577	Pre-mRNA-splicing factor SYF1. (797 aa)
	TRIUR3_19133	Uncharacterized protein. (1261 aa)
	TRIUR3_13212	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase. (643 aa)
	TRIUR3_00955	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (342 aa)
	TRIUR3_23378	Uncharacterized protein. (178 aa)
	TRIUR3_03576	Protein CWC15-like protein A. (320 aa)
	TRIUR3_31022	Uncharacterized protein. (60 aa)
	TRIUR3_21866	Uncharacterized protein. (230 aa)
	TRIUR3_23949	Uncharacterized protein. (77 aa)
	TRIUR3_19132	Uncharacterized protein. (304 aa)
	TRIUR3_25783	Cwf21 domain-containing protein. (741 aa)
	TRIUR3_25741	Uncharacterized protein. (68 aa)
	TRIUR3_15048	Protein BUD31-like protein 1. (666 aa)
	TRIUR3_25389	WD repeat-containing protein 70. (468 aa)
	TRIUR3_17646	Uncharacterized protein. (348 aa)
	TRIUR3_14727	Uncharacterized protein. (126 aa)
	T1LD24_TRIUA	Uncharacterized protein. (1629 aa)
	T1LKF5_TRIUA	G-patch domain-containing protein. (344 aa)
	T1LQW7_TRIUA	Poly [ADP-ribose] polymerase. (719 aa)
	T1LQY7_TRIUA	Uncharacterized protein. (563 aa)
	T1LW74_TRIUA	Uncharacterized protein. (266 aa)
	T1M6F1_TRIUA	Uncharacterized protein. (1267 aa)
	T1M6F2_TRIUA	RING-type domain-containing protein. (517 aa)
	T1M6W4_TRIUA	Uncharacterized protein. (161 aa)
	T1M921_TRIUA	RRM domain-containing protein. (150 aa)
	T1MK11_TRIUA	Uncharacterized protein. (1763 aa)
	T1MP21_TRIUA	Uncharacterized protein. (347 aa)
	T1MWV8_TRIUA	RRM domain-containing protein. (99 aa)
	T1NDQ7_TRIUA	Uncharacterized protein. (172 aa)
	T1NG46_TRIUA	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (163 aa)

Your Current Organism:

Triticum urartu

NCBI taxonomy Id: 4572
Other names: T. urartu, Triticum urartu Tumanian ex Gandilyan

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1LD24_TRIUA	T1LKF5_TRIUA	T1LD24	T1LKF5	Uncharacterized protein.	G-patch domain-containing protein.	0.786
T1LD24_TRIUA	T1LQW7_TRIUA	T1LD24	T1LQW7	Uncharacterized protein.	Poly [ADP-ribose] polymerase.	0.469
T1LD24_TRIUA	T1LQY7_TRIUA	T1LD24	T1LQY7	Uncharacterized protein.	Uncharacterized protein.	0.801
T1LD24_TRIUA	T1M6F1_TRIUA	T1LD24	T1M6F1	Uncharacterized protein.	Uncharacterized protein.	0.758
T1LD24_TRIUA	T1M6W4_TRIUA	T1LD24	T1M6W4	Uncharacterized protein.	Uncharacterized protein.	0.780
T1LD24_TRIUA	T1M921_TRIUA	T1LD24	T1M921	Uncharacterized protein.	RRM domain-containing protein.	0.469
T1LD24_TRIUA	T1MK11_TRIUA	T1LD24	T1MK11	Uncharacterized protein.	Uncharacterized protein.	0.757
T1LD24_TRIUA	T1MP21_TRIUA	T1LD24	T1MP21	Uncharacterized protein.	Uncharacterized protein.	0.970
T1LD24_TRIUA	T1MWV8_TRIUA	T1LD24	T1MWV8	Uncharacterized protein.	RRM domain-containing protein.	0.469
T1LD24_TRIUA	T1NDQ7_TRIUA	T1LD24	T1NDQ7	Uncharacterized protein.	Uncharacterized protein.	0.512
T1LD24_TRIUA	T1NG46_TRIUA	T1LD24	T1NG46	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.732
T1LD24_TRIUA	TRIUR3_00577	T1LD24	M8A2M2	Uncharacterized protein.	Pre-mRNA-splicing factor SYF1.	0.833
T1LD24_TRIUA	TRIUR3_00661	T1LD24	M8A2C0	Uncharacterized protein.	WD repeat-containing protein 25.	0.928
T1LD24_TRIUA	TRIUR3_00955	T1LD24	M8A5D1	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.	0.744
T1LD24_TRIUA	TRIUR3_01054	T1LD24	M7Z091	Uncharacterized protein.	Pre-mRNA-splicing factor 18.	0.921
T1LD24_TRIUA	TRIUR3_01277	T1LD24	M7ZEA4	Uncharacterized protein.	Uncharacterized protein.	0.773
T1LD24_TRIUA	TRIUR3_01794	T1LD24	M7ZKE8	Uncharacterized protein.	Pre-mRNA-splicing factor 18.	0.921
T1LD24_TRIUA	TRIUR3_02691	T1LD24	M7Z844	Uncharacterized protein.	CWF19-like protein 2.	0.763
T1LD24_TRIUA	TRIUR3_03576	T1LD24	M8A7G4	Uncharacterized protein.	Protein CWC15-like protein A.	0.774
T1LD24_TRIUA	TRIUR3_03577	T1LD24	M7ZLV3	Uncharacterized protein.	Uncharacterized protein.	0.757