16 items (Zea mays) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1D6EPM4	Protein TIFY 6B. (539 aa)
	A0A1D6G883	Coronatine-insensitive protein 1. (596 aa)
	A0A1D6HJC0	Tify domain-containing protein. (338 aa)
	Pco139385c	Protein TIFY 6B. (413 aa)
	Myc7	Myc transcription factor7. (705 aa)
	A0A1D6L3P2	Protein TIFY 3B. (173 aa)
	A0A1D6M504	Coronatine-insensitive protein 1. (599 aa)
	A0A1D6PE20	Coronatine-insensitive protein 1. (591 aa)
	A0A1D6Q1C6	Protein TIFY 6B. (438 aa)
	Pco137346	TIFY transcription factor. (227 aa)
	B4G0I3_MAIZE	Protein TIFY 9. (180 aa)
	B6TPN4_MAIZE	Coronatine-insensitive protein 1. (599 aa)
	C0HHL9_MAIZE	Protein TIFY 10B. (228 aa)
	Pco123637(113)	ZIM transcription factor. (216 aa)
	Cl896_1	Coronatine-insensitive protein 1. (598 aa)
	K7VC27_MAIZE	Putative HLH DNA-binding domain superfamily protein. (703 aa)

Your Current Organism:

Zea mays

NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1D6EPM4	A0A1D6G883	A0A1D6EPM4	A0A1D6G883	Protein TIFY 6B.	Coronatine-insensitive protein 1.	0.841
A0A1D6EPM4	A0A1D6M504	A0A1D6EPM4	A0A1D6M504	Protein TIFY 6B.	Coronatine-insensitive protein 1.	0.841
A0A1D6EPM4	A0A1D6PE20	A0A1D6EPM4	A0A1D6PE20	Protein TIFY 6B.	Coronatine-insensitive protein 1.	0.665
A0A1D6EPM4	B4G0I3_MAIZE	A0A1D6EPM4	B4G0I3	Protein TIFY 6B.	Protein TIFY 9.	0.538
A0A1D6EPM4	B6TPN4_MAIZE	A0A1D6EPM4	B6TPN4	Protein TIFY 6B.	Coronatine-insensitive protein 1.	0.841
A0A1D6EPM4	Cl896_1	A0A1D6EPM4	C4J3Z7	Protein TIFY 6B.	Coronatine-insensitive protein 1.	0.841
A0A1D6EPM4	K7VC27_MAIZE	A0A1D6EPM4	K7VC27	Protein TIFY 6B.	Putative HLH DNA-binding domain superfamily protein.	0.888
A0A1D6EPM4	Myc7	A0A1D6EPM4	A0A1D6K972	Protein TIFY 6B.	Myc transcription factor7.	0.888
A0A1D6G883	A0A1D6EPM4	A0A1D6G883	A0A1D6EPM4	Coronatine-insensitive protein 1.	Protein TIFY 6B.	0.841
A0A1D6G883	A0A1D6HJC0	A0A1D6G883	A0A1D6HJC0	Coronatine-insensitive protein 1.	Tify domain-containing protein.	0.772
A0A1D6G883	A0A1D6L3P2	A0A1D6G883	A0A1D6L3P2	Coronatine-insensitive protein 1.	Protein TIFY 3B.	0.786
A0A1D6G883	A0A1D6Q1C6	A0A1D6G883	A0A1D6Q1C6	Coronatine-insensitive protein 1.	Protein TIFY 6B.	0.841
A0A1D6G883	B4G0I3_MAIZE	A0A1D6G883	B4G0I3	Coronatine-insensitive protein 1.	Protein TIFY 9.	0.808
A0A1D6G883	C0HHL9_MAIZE	A0A1D6G883	C0HHL9	Coronatine-insensitive protein 1.	Protein TIFY 10B.	0.855
A0A1D6G883	Pco123637(113)	A0A1D6G883	C4IZT6	Coronatine-insensitive protein 1.	ZIM transcription factor.	0.816
A0A1D6G883	Pco137346	A0A1D6G883	B4F860	Coronatine-insensitive protein 1.	TIFY transcription factor.	0.801
A0A1D6G883	Pco139385c	A0A1D6G883	A0A1D6I409	Coronatine-insensitive protein 1.	Protein TIFY 6B.	0.715
A0A1D6HJC0	A0A1D6G883	A0A1D6HJC0	A0A1D6G883	Tify domain-containing protein.	Coronatine-insensitive protein 1.	0.772
A0A1D6HJC0	A0A1D6M504	A0A1D6HJC0	A0A1D6M504	Tify domain-containing protein.	Coronatine-insensitive protein 1.	0.772
A0A1D6HJC0	B4G0I3_MAIZE	A0A1D6HJC0	B4G0I3	Tify domain-containing protein.	Protein TIFY 9.	0.688