STRINGSTRING
LSM1 LSM1 A0A1D6EI19 A0A1D6EI19 A0A1D6EN61 A0A1D6EN61 A0A1D6FFR5 A0A1D6FFR5 A0A1D6H8X7 A0A1D6H8X7 A0A1D6H8X9 A0A1D6H8X9 A0A1D6HXL6 A0A1D6HXL6 A0A1D6J0C4 A0A1D6J0C4 A0A1D6J0C6 A0A1D6J0C6 A0A1D6J7J2 A0A1D6J7J2 A0A1D6JFB0 A0A1D6JFB0 A0A1D6LIX8 A0A1D6LIX8 A0A1D6LS98 A0A1D6LS98 A0A1D6ML95 A0A1D6ML95 A0A1D6MPT6 A0A1D6MPT6 LSM3 LSM3 A0A1D6P878 A0A1D6P878 A0A1D6Q5Y2 A0A1D6Q5Y2 B4FCE3_MAIZE B4FCE3_MAIZE B4FLA3_MAIZE B4FLA3_MAIZE AY110400 AY110400 B6TLY3_MAIZE B6TLY3_MAIZE B6U772_MAIZE B6U772_MAIZE B6UER1_MAIZE B6UER1_MAIZE
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
A0A1D6EI19mRNA-decapping enzyme-like protein. (456 aa)
A0A1D6EN61mRNA-decapping enzyme-like protein. (407 aa)
A0A1D6FFR5Enhancer of mRNA-decapping protein 4. (142 aa)
A0A1D6H8X7Sm-like protein LSM6A. (159 aa)
A0A1D6H8X9Sm-like protein LSM6A. (43 aa)
A0A1D6HXL6mRNA-decapping enzyme subunit 2. (195 aa)
A0A1D6J0C4SnRNP core Sm protein Sm-X5-like protein. (141 aa)
A0A1D6J0C6Sm-like protein LSM2. (80 aa)
A0A1D6J7J2U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (137 aa)
A0A1D6JFB0LSM7-like. (147 aa)
A0A1D6LIX8Tetratricopeptide repeat (TPR)-like superfamily protein. (230 aa)
A0A1D6LS98D-aminoacyl-tRNA deacylase. (332 aa)
A0A1D6ML95Uncharacterized protein. (157 aa)
A0A1D6MPT6U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (178 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (133 aa)
A0A1D6P878Uncharacterized protein. (277 aa)
A0A1D6Q5Y2Putative DEAD-box ATP-dependent RNA helicase family protein; Belongs to the DEAD box helicase family. (522 aa)
B4FCE3_MAIZESmall nuclear ribonucleoprotein F. (95 aa)
B4FLA3_MAIZEU6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (88 aa)
AY110400U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
B6TLY3_MAIZEDEAD-box ATP-dependent RNA helicase 8; Belongs to the DEAD box helicase family. (503 aa)
B6U772_MAIZELSM7-like. (98 aa)
B6UER1_MAIZESm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize
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