9 items (Zea mays) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1D6HTR3	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (1608 aa)
	A0A1D6JKV6	DNA (Cytosine-5)-methyltransferase DRM2. (707 aa)
	A0A1D6NHE6	DNA (Cytosine-5)-methyltransferase CMT3. (126 aa)
	A0A1D6NJ95	DNA (Cytosine-5)-methyltransferase DRM2. (245 aa)
	C0HHZ5_MAIZE	DNA (Cytosine-5)-methyltransferase DRM2. (603 aa)
	K7TNK0_MAIZE	DNA methyl transferase2. (915 aa)
	DMT105	DNA (cytosine-5)-methyltransferase 3; May be involved in the CpXpG methylation and in gene silencing. (915 aa)
	ZMET5	DNA (cytosine-5)-methyltransferase 2; May be involved in the CpXpG methylation and in gene silencing. (915 aa)
	MET2A	DNA (cytosine-5)-methyltransferase 1; Involved in the CpXpG methylation and in gene silencing. (912 aa)

Your Current Organism:

Zea mays

NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1D6HTR3	C0HHZ5_MAIZE	A0A1D6HTR3	C0HHZ5	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	DNA (Cytosine-5)-methyltransferase DRM2.	0.401
A0A1D6HTR3	DMT105	A0A1D6HTR3	Q8LPU5	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	DNA (cytosine-5)-methyltransferase 3; May be involved in the CpXpG methylation and in gene silencing.	0.917
A0A1D6HTR3	MET2A	A0A1D6HTR3	Q9AXT8	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	DNA (cytosine-5)-methyltransferase 1; Involved in the CpXpG methylation and in gene silencing.	0.919
A0A1D6NHE6	C0HHZ5_MAIZE	A0A1D6NHE6	C0HHZ5	DNA (Cytosine-5)-methyltransferase CMT3.	DNA (Cytosine-5)-methyltransferase DRM2.	0.401
C0HHZ5_MAIZE	A0A1D6HTR3	C0HHZ5	A0A1D6HTR3	DNA (Cytosine-5)-methyltransferase DRM2.	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	0.401
C0HHZ5_MAIZE	A0A1D6NHE6	C0HHZ5	A0A1D6NHE6	DNA (Cytosine-5)-methyltransferase DRM2.	DNA (Cytosine-5)-methyltransferase CMT3.	0.401
C0HHZ5_MAIZE	MET2A	C0HHZ5	Q9AXT8	DNA (Cytosine-5)-methyltransferase DRM2.	DNA (cytosine-5)-methyltransferase 1; Involved in the CpXpG methylation and in gene silencing.	0.578
DMT105	A0A1D6HTR3	Q8LPU5	A0A1D6HTR3	DNA (cytosine-5)-methyltransferase 3; May be involved in the CpXpG methylation and in gene silencing.	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	0.917
DMT105	MET2A	Q8LPU5	Q9AXT8	DNA (cytosine-5)-methyltransferase 3; May be involved in the CpXpG methylation and in gene silencing.	DNA (cytosine-5)-methyltransferase 1; Involved in the CpXpG methylation and in gene silencing.	0.954
MET2A	A0A1D6HTR3	Q9AXT8	A0A1D6HTR3	DNA (cytosine-5)-methyltransferase 1; Involved in the CpXpG methylation and in gene silencing.	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	0.919
MET2A	C0HHZ5_MAIZE	Q9AXT8	C0HHZ5	DNA (cytosine-5)-methyltransferase 1; Involved in the CpXpG methylation and in gene silencing.	DNA (Cytosine-5)-methyltransferase DRM2.	0.578
MET2A	DMT105	Q9AXT8	Q8LPU5	DNA (cytosine-5)-methyltransferase 1; Involved in the CpXpG methylation and in gene silencing.	DNA (cytosine-5)-methyltransferase 3; May be involved in the CpXpG methylation and in gene silencing.	0.954