(128 nodes) RNA polymerase II, holoenzyme network (Zea mays)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1D6G7M3	Uncharacterized protein. (106 aa)
	A0A1D6MLB9	DNA-directed RNA polymerase II subunit 1. (125 aa)
	A0A1D6MKW2	Transcription initiation factor TFIID subunit 4b. (526 aa)
	Si660063f11	Transcription initiation factor TFIID subunit 4b. (773 aa)
	A0A1D6M3F6	Putative cyclin-dependent kinase family protein; Belongs to the protein kinase superfamily. (430 aa)
	A0A1D6M0J8	Transcription factor IIA alpha/beta subunit. (541 aa)
	A0A1D6LQL3	WD_REPEATS_REGION domain-containing protein. (179 aa)
	A0A1D6LBX9	Zinc finger CCCH domain-containing protein 20. (182 aa)
	A0A1D6LBU5	DNA binding protein. (793 aa)
	A0A1D6L6M5	Transcription initiation factor TFIID subunit 7. (157 aa)
	A0A1D6KX11	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1227 aa)
	A0A1D6KUJ9	DNA-directed RNA polymerase. (298 aa)
	A0A1D6KR25	Zinc finger CCCH domain-containing protein 19. (684 aa)
	A0A1D6KR23	Zinc finger CCCH domain-containing protein 20. (1092 aa)
	A0A1D6KLG3	DNA binding protein. (240 aa)
	A0A1D6KJQ1	DNA binding protein. (385 aa)
	A0A1D6KID2	Leucine aminopeptidase 2 chloroplastic. (318 aa)
	A0A1D6KGG6	RNA polymerase II transcription factor B subunit 5. (87 aa)
	A0A1D6KD11	Transcription factor TFIIE alpha subunit. (428 aa)
	A0A1D6KD09	Transcription factor TFIIE alpha subunit. (91 aa)
	A0A1D6K665	Transcription initiation factor TFIID subunit 4b. (928 aa)
	A0A1D6K334	DNA binding protein. (240 aa)
	A0A1D6JL09	Zinc finger CCCH domain-containing protein 19. (2615 aa)
	A0A1D6JFH0	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1229 aa)
	A0A1D6J503	Transcription initiation factor TFIID subunit 5. (183 aa)
	Cl37436_2(612)	Protein PAF1-like protein. (766 aa)
	A0A1D6IZ35	Pentatricopeptide repeat-containing protein chloroplastic. (961 aa)
	Umc1473	Protein RTF1-like protein. (747 aa)
	A0A1D6IU95	DNA-directed RNA polymerases II IV and V subunit 10. (170 aa)
	A0A1D6IM64	Protein CTR9-like protein. (344 aa)
	A0A1D6ILF7	Uncharacterized protein. (235 aa)
	A0A1D6IJK5	DNA-directed RNA polymerase subunit. (194 aa)
	A0A1D6I459	Transcription initiation factor TFIID subunit 2. (1191 aa)
	A0A1D6HYF9	DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide. (52 aa)
	A0A1D6HRH2	Protein LEO1-like protein. (662 aa)
	A0A1D6HD77	DNA-directed RNA polymerases II IV and V subunit 11. (97 aa)
	A0A1D6HD76	DNA-directed RNA polymerases II IV and V subunit 11. (183 aa)
	A0A1D6HD72	DNA-directed RNA polymerases II IV and V subunit 11. (118 aa)
	A0A1D6HD71	DNA-directed RNA polymerases II IV and V subunit 11. (94 aa)
	A0A1D6HD63	DNA-directed RNA polymerases II IV and V subunit 11. (136 aa)
	A0A1D6H6T3	Transcription initiation factor TFIID subunit 5. (145 aa)
	A0A1D6H1P4	Transcription initiation factor TFIID subunit 7. (288 aa)
	A0A1D6GUL6	DNA-directed RNA polymerases II IV and V subunit 8B. (129 aa)
	A0A1D6GSA3	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (568 aa)
	A0A1D6GN10	Zinc finger CCCH domain-containing protein 19. (1672 aa)
	A0A1D6GLH1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1229 aa)
	A0A1D6GHY0	CDK-activating kinase assembly factor MAT1 family protein. (223 aa)
	A0A1D6GGP4	DNA-directed RNA polymerases II IV and V subunit 11. (73 aa)
	A0A1D6GE28	Transcription initiation factor TFIID subunit 7. (129 aa)
	A0A1D6GC21	Zinc finger CCCH domain-containing protein 19. (1844 aa)
	A0A1D6FA13	Transcription initiation factor TFIID subunit 9. (169 aa)
	A0A1D6EPP5	Transcription initiation factor TFIID subunit 2. (367 aa)
	A0A1D6EMG7	DNA-directed RNA polymerases II IV and V subunit 12. (69 aa)
	A0A1D6ELK2	DNA-directed RNA polymerases II IV and V subunit 3. (350 aa)
	A0A1D6EF90	DNA-directed RNA polymerase subunit. (113 aa)
	A0A1D6EEQ6	Protein RTF1-like protein. (383 aa)
	A0A1D6EDF4	DNA-directed RNA polymerases II IV and V subunit 9A. (83 aa)
	A0A1D6E2I0	DNA binding protein. (240 aa)
	A0A1D6E2B4	Protein CTR9-like protein. (1065 aa)
	Pco135861(187)	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (322 aa)
	A0A1D6DWM4	Transcription initiation factor TFIID subunit 7. (143 aa)
	A0A1D6DT30	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (451 aa)
	A0A096T0J9	Protein CDC73-like protein. (379 aa)
	A0A1D6MN44	Uncharacterized protein. (172 aa)
	A0A1D6MWS3	Transcription initiation factor TFIID subunit 8. (357 aa)
	A0A1D6MY22	Transcription initiation factor TFIID subunit 8. (370 aa)
	A0A1D6N0A5	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (112 aa)
	A0A1D6N2N0	ENTH/VHS family protein. (443 aa)
	A0A1D6N4X1	DNA-directed RNA polymerase II subunit 1. (142 aa)
	A0A1D6N6Q8	Transcription initiation factor TFIID subunit 12. (492 aa)
	A0A1D6N779	Transcription initiation factor TFIID subunit 12b. (474 aa)
	A0A1D6NBT1	Zinc finger CCCH domain-containing protein 19. (1825 aa)
	A0A1D6NF15	DNA repair helicase XPB1. (767 aa)
	A0A1D6NFS2	TAFII28 domain-containing protein. (685 aa)
	A0A1D6NQJ4	ENTH/VHS family protein. (586 aa)
	A0A1D6NRI1	Transcription initiation factor TFIID subunit 5. (129 aa)
	A0A1D6NUA7	CDK-activating kinase assembly factor MAT1 family protein. (202 aa)
	A0A1D6P3J9	Transcription initiation factor TFIID subunit 1. (1807 aa)
	A0A1D6P515	Transcription initiation factor TFIID subunit 5. (673 aa)
	A0A1D6P879	Transcription initiation factor TFIID subunit 9. (250 aa)
	A0A1D6PBW4	DNA binding protein. (130 aa)
	A0A1D6PER1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (552 aa)
	A0A1D6PL72	Zinc finger CCCH domain-containing protein 19. (2259 aa)
	A0A1D6PNQ5	WD repeat-containing protein VIP3. (297 aa)
	A0A1D6PVZ8	Protein PAF1-like protein. (722 aa)
	A0A1D6PW72	Putative RNA polymerase II transcription factor B subunit 1-1. (610 aa)
	A0A1D6PX40	Uncharacterized protein. (102 aa)
	A0A1D6Q3M5	Bromodomain transcription factor. (229 aa)
	A0A1D6QLN3	Zinc finger CCCH domain-containing protein 20. (196 aa)
	A0A1D6QMC6	Transcription initiation factor TFIID subunit 5. (161 aa)
	A0A1Q0XTP9	Transcription initiation factor TFIID subunit 2. (321 aa)
	A0A1Q0ZAV5	DNA binding protein. (671 aa)
	A0A1X7YH55	Uncharacterized protein. (287 aa)
	A0A1X7YI76	RNA_pol_Rpb1_2 domain-containing protein. (103 aa)
	B4FAS0_MAIZE	Transcription initiation factor TFIID subunit 9. (225 aa)
	B4FGM1_MAIZE	DNA-directed RNA polymerases II and IV subunit 5A. (206 aa)
	B4FLZ6_MAIZE	DNA-directed RNA polymerases II IV and V subunit 6A. (142 aa)
	Pco144871	DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (146 aa)
	Pco075430a	CDC2+/CDC28-related protein kinase R2; Belongs to the protein kinase superfamily. (428 aa)
	Pco088367b	DNA-directed RNA polymerases II 24 kDa polypeptide. (210 aa)
	B4FUQ5_MAIZE	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. (153 aa)
	B4FWI2_MAIZE	RNA polymerase II transcription factor/ transcription initiation factor. (460 aa)
	B4FZC9_MAIZE	Uncharacterized protein. (77 aa)
	B4G0C7_MAIZE	General transcription factor IIH subunit. (428 aa)
	B4G147_MAIZE	DNA-directed RNA polymerase II 19 kDa polypeptide. (177 aa)
	B6SI57_MAIZE	DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide. (142 aa)
	B6SLK8_MAIZE	DNA-directed RNA polymerase II 16 kDa polypeptide. (144 aa)
	B6SX64_MAIZE	REX1 DNA Repair family protein. (70 aa)
	Umc1300	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (114 aa)
	B6TU14_MAIZE	BTP domain-containing protein. (249 aa)
	B6UCY0_MAIZE	SANTA domain-containing protein. (491 aa)
	B7ZX72_MAIZE	Protein RTF1-like protein. (647 aa)
	Pco097658	Transcription initiation factor TFIID subunit 6. (545 aa)
	C0P301_MAIZE	RNA polymerase II transcription factor B subunit 4. (294 aa)
	Pco103361	Cyclin-H1-1; Belongs to the cyclin family. (329 aa)
	Rmr7	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1229 aa)
	K7TLH8_MAIZE	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1259 aa)
	K7TLU2_MAIZE	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1850 aa)
	K7URD5_MAIZE	DNA-directed RNA polymerases II IV and V subunit 12. (45 aa)
	K7V2B3_MAIZE	Transcription factor IIA alpha/beta subunit. (434 aa)
	K7VNK4_MAIZE	Transcription initiation factor TFIID subunit 12b. (551 aa)
	K7WDY8_MAIZE	Transcription initiation factor TFIID subunit 7. (157 aa)
	A0A1D6G621	Transcription factor TFIIE alpha subunit. (265 aa)
	A0A1D6G566	ENTH/VHS family protein. (510 aa)
	A0A1D6G245	Transcription initiation factor TFIID subunit 11, mRNA. (274 aa)
	A0A1D6FW75	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (119 aa)
	A0A1D6FSW5	Transcription initiation factor IIF beta subunit. (277 aa)
	A0A1D6FAE0	Protein LEO1-like protein. (678 aa)

Your Current Organism:

Zea mays

NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A096T0J9	A0A1D6E2B4	A0A096T0J9	A0A1D6E2B4	Protein CDC73-like protein.	Protein CTR9-like protein.	0.994
A0A096T0J9	A0A1D6EDF4	A0A096T0J9	A0A1D6EDF4	Protein CDC73-like protein.	DNA-directed RNA polymerases II IV and V subunit 9A.	0.870
A0A096T0J9	A0A1D6EEQ6	A0A096T0J9	A0A1D6EEQ6	Protein CDC73-like protein.	Protein RTF1-like protein.	0.960
A0A096T0J9	A0A1D6EF90	A0A096T0J9	A0A1D6EF90	Protein CDC73-like protein.	DNA-directed RNA polymerase subunit.	0.870
A0A096T0J9	A0A1D6ELK2	A0A096T0J9	A0A1D6ELK2	Protein CDC73-like protein.	DNA-directed RNA polymerases II IV and V subunit 3.	0.954
A0A096T0J9	A0A1D6EMG7	A0A096T0J9	A0A1D6EMG7	Protein CDC73-like protein.	DNA-directed RNA polymerases II IV and V subunit 12.	0.812
A0A096T0J9	A0A1D6FAE0	A0A096T0J9	A0A1D6FAE0	Protein CDC73-like protein.	Protein LEO1-like protein.	0.992
A0A096T0J9	A0A1D6FSW5	A0A096T0J9	A0A1D6FSW5	Protein CDC73-like protein.	Transcription initiation factor IIF beta subunit.	0.446
A0A096T0J9	A0A1D6G7M3	A0A096T0J9	A0A1D6G7M3	Protein CDC73-like protein.	Uncharacterized protein.	0.663
A0A096T0J9	A0A1D6GC21	A0A096T0J9	A0A1D6GC21	Protein CDC73-like protein.	Zinc finger CCCH domain-containing protein 19.	0.588
A0A096T0J9	A0A1D6GGP4	A0A096T0J9	A0A1D6GGP4	Protein CDC73-like protein.	DNA-directed RNA polymerases II IV and V subunit 11.	0.830
A0A096T0J9	A0A1D6GLH1	A0A096T0J9	A0A1D6GLH1	Protein CDC73-like protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.793
A0A096T0J9	A0A1D6GN10	A0A096T0J9	A0A1D6GN10	Protein CDC73-like protein.	Zinc finger CCCH domain-containing protein 19.	0.588
A0A096T0J9	A0A1D6GUL6	A0A096T0J9	A0A1D6GUL6	Protein CDC73-like protein.	DNA-directed RNA polymerases II IV and V subunit 8B.	0.927
A0A096T0J9	A0A1D6HD63	A0A096T0J9	A0A1D6HD63	Protein CDC73-like protein.	DNA-directed RNA polymerases II IV and V subunit 11.	0.830
A0A096T0J9	A0A1D6HD71	A0A096T0J9	A0A1D6HD71	Protein CDC73-like protein.	DNA-directed RNA polymerases II IV and V subunit 11.	0.830
A0A096T0J9	A0A1D6HD72	A0A096T0J9	A0A1D6HD72	Protein CDC73-like protein.	DNA-directed RNA polymerases II IV and V subunit 11.	0.830
A0A096T0J9	A0A1D6HD76	A0A096T0J9	A0A1D6HD76	Protein CDC73-like protein.	DNA-directed RNA polymerases II IV and V subunit 11.	0.830
A0A096T0J9	A0A1D6HD77	A0A096T0J9	A0A1D6HD77	Protein CDC73-like protein.	DNA-directed RNA polymerases II IV and V subunit 11.	0.830
A0A096T0J9	A0A1D6HRH2	A0A096T0J9	A0A1D6HRH2	Protein CDC73-like protein.	Protein LEO1-like protein.	0.992