107 items (Zea mays) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1D6MEG3	Putative DUF947 domain containing family protein. (167 aa)
	Pco078628	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (335 aa)
	Gpm697	ARM repeat superfamily protein. (1733 aa)
	A0A1D6ML08	ARM repeat superfamily protein. (210 aa)
	A0A1D6MME2	40S ribosomal protein S8-1. (221 aa)
	A0A1D6MRB0	Uncharacterized protein. (358 aa)
	A0A1D6MUH7	Uncharacterized protein. (140 aa)
	A0A1D6MWA7	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (413 aa)
	A0A1D6N557	40S ribosomal protein S8-1. (245 aa)
	A0A1D6N591	Serine/threonine-protein kinase RIO2. (493 aa)
	A0A1D6N841	P-loop containing nucleoside triphosphate hydrolase superfamily protein. (161 aa)
	A0A1D6NCD9	Transducin family protein / WD-40 repeat family protein. (382 aa)
	A0A1D6NDR6	Testis intracellular mediator protein. (230 aa)
	A0A1D6NNW0	40S ribosomal protein S21-2. (90 aa)
	A0A1D6NSS4	Nucleolar protein 10. (721 aa)
	A0A1D6NWC7	Embryo sac development arrest 7. (712 aa)
	A0A1D6PYX5	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (261 aa)
	A0A1D6Q6E5	Ankyrin repeat family protein. (306 aa)
	A0A1D6QHR9	40S ribosomal protein S14-3. (112 aa)
	A0A1D6QKK7	Testis intracellular mediator protein. (275 aa)
	A0A1D6QSP0	Uncharacterized protein. (135 aa)
	A0A1D6QUR7	Uncharacterized protein; Belongs to the NOB1 family. (582 aa)
	A0A1R3QFZ8	Testis intracellular mediator protein. (188 aa)
	A0A1X7YEX2	Uncharacterized protein. (112 aa)
	Cl25046_1a	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (166 aa)
	B4FC44_MAIZE	RNA-binding (RRM/RBD/RNP motifs) family protein. (254 aa)
	B4FCE3_MAIZE	Small nuclear ribonucleoprotein F. (95 aa)
	B4FDE3_MAIZE	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (81 aa)
	B4FIM6_MAIZE	Sas10/Utp3/C1D family. (332 aa)
	Pco144488	Sas10/Utp3/C1D family. (331 aa)
	B4FXR9_MAIZE	Nucleotide binding. (452 aa)
	K7UXK0_MAIZE	Uncharacterized protein. (363 aa)
	B6SIP0_MAIZE	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (127 aa)
	B6T442_MAIZE	Putative ribosomal protein S11 mitochondrial. (252 aa)
	B6THD0_MAIZE	Uncharacterized protein; Belongs to the NOB1 family. (570 aa)
	B6UE59_MAIZE	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (160 aa)
	B6UHS8_MAIZE	Uncharacterized protein. (327 aa)
	C0HIC4_MAIZE	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (80 aa)
	C0P3P5_MAIZE	Probable ribosome biogenesis protein ZEAMMB73_Zm00001d048190; Probable pre-rRNA processing protein involved in ribosome biogenesis. (272 aa)
	C0PBC5_MAIZE	Utp12 domain-containing protein. (266 aa)
	IDP27	Protein serine/threonine kinases. (494 aa)
	K7TM55_MAIZE	U3 small nucleolar RNA-associated protein 25. (654 aa)
	K7TXF3_MAIZE	Uncharacterized protein. (334 aa)
	RPS21	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (81 aa)
	RPS8	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (221 aa)
	RPS28	40S ribosomal protein S28. (65 aa)
	RS142_MAIZE	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (150 aa)
	Pco069156	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (149 aa)
	rps11	30S ribosomal protein S11, chloroplastic; Belongs to the universal ribosomal protein uS11 family. (143 aa)
	K7VC39_MAIZE	Uncharacterized protein. (269 aa)
	K7VLX2_MAIZE	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (78 aa)
	A0A1D6DZN4	Uncharacterized protein. (292 aa)
	A0A1D6E1H8	Transducin family protein / WD-40 repeat family protein. (910 aa)
	A0A1D6EHD4	Uncharacterized protein. (142 aa)
	A0A1D6EL23	Protein serine/threonine kinases. (113 aa)
	A0A1D6ETC9	Testis intracellular mediator protein. (303 aa)
	A0A1D6EZJ2	P-loop containing nucleoside triphosphate hydrolase superfamily protein. (127 aa)
	A0A1D6EZS9	Uncharacterized protein. (312 aa)
	A0A1D6F476	Uncharacterized protein. (419 aa)
	A0A1D6FA14	U3 small nucleolar RNA-associated protein 6. (681 aa)
	A0A1D6FC51	DUF2361 family protein. (117 aa)
	A0A1D6FF89	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (353 aa)
	A0A1D6FL68	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1042 aa)
	A0A1D6FND5	Sas10/Utp3/C1D family. (196 aa)
	A0A1D6FQR0	Uncharacterized protein. (166 aa)
	Pco092396	DUF2361 family protein. (320 aa)
	A0A1D6GL56	Pre-rRNA-processing protein TSR2. (210 aa)
	A0A1D6GW55	KRR1 family protein. (638 aa)
	A0A1D6H6L9	NAM-associated domain-containing protein. (207 aa)
	A0A1D6H6R4	Uncharacterized protein. (315 aa)
	A0A1D6H8X7	Sm-like protein LSM6A. (159 aa)
	A0A1D6H8X9	Sm-like protein LSM6A. (43 aa)
	A0A1D6HJM8	ATP-dependent RNA helicase DEAH13. (1279 aa)
	A0A1D6HQA1	Uncharacterized protein. (117 aa)
	A0A1D6HWX1	Ankyrin repeat family protein. (157 aa)
	A0A1D6HZ71	Sas10/Utp3/C1D family. (86 aa)
	A0A1D6I1X5	Testis intracellular mediator protein. (208 aa)
	A0A1D6I954	Testis intracellular mediator protein. (112 aa)
	A0A1D6IFQ7	Uncharacterized protein. (128 aa)
	A0A1D6IHA7	Uncharacterized protein. (110 aa)
	A0A1D6ILC9	DEAD-box ATP-dependent RNA helicase 57. (706 aa)
	A0A1D6IUS2	Uncharacterized protein. (386 aa)
	A0A1D6JDC4	Transducin family protein / WD-40 repeat family protein. (923 aa)
	A0A1D6JNW9	Transducin family protein / WD-40 repeat family protein. (959 aa)
	Umc1160	Ribosomal large subunit pseudouridine synthase B. (387 aa)
	A0A1D6JPY6	40S ribosomal protein S28. (103 aa)
	A0A1D6JVN9	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (156 aa)
	A0A1D6K098	Protein serine/threonine kinases. (177 aa)
	A0A1D6K1Z1	P-loop containing nucleoside triphosphate hydrolase superfamily protein. (1184 aa)
	A0A1D6K6B1	Uncharacterized protein. (310 aa)
	A0A1D6K731	P-loop containing nucleoside triphosphate hydrolase superfamily protein. (238 aa)
	A0A1D6KBT5	Uncharacterized protein. (172 aa)
	A0A1D6KCY5	Pumilio homolog 23. (841 aa)
	A0A1D6KI86	Sas10/U3 ribonucleoprotein (Utp) family protein. (633 aa)
	A0A1D6KII1	Embryo sac development arrest 7. (156 aa)
	A0A1D6KIQ9	DUF2361 family protein. (179 aa)
	A0A1D6KUD9	Uncharacterized protein. (132 aa)
	A0A1D6KWG1	Mitochondrial fission protein ELM1. (297 aa)
	A0A1D6KWQ3	Uncharacterized protein. (922 aa)
	A0A1D6L7W1	DUF2361 family protein. (142 aa)
	A0A1D6LHF6	P-loop containing nucleoside triphosphate hydrolase superfamily protein. (795 aa)
	A0A1D6LMP2	Transducin/WD40 repeat-like superfamily protein. (509 aa)
	A0A1D6LN62	DUF2361 family protein. (117 aa)
	A0A1D6LPG1	40S ribosomal protein S14-3. (216 aa)
	A0A1D6LS71	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (72 aa)
	A0A1D6LUH0	Uncharacterized protein. (243 aa)
	A0A1D6MAS1	Periodic tryptophan protein 2. (885 aa)

Your Current Organism:

Zea mays

NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1D6DZN4	A0A1D6E1H8	A0A1D6DZN4	A0A1D6E1H8	Uncharacterized protein.	Transducin family protein / WD-40 repeat family protein.	0.906
A0A1D6DZN4	A0A1D6ETC9	A0A1D6DZN4	A0A1D6ETC9	Uncharacterized protein.	Testis intracellular mediator protein.	0.450
A0A1D6DZN4	A0A1D6EZJ2	A0A1D6DZN4	A0A1D6EZJ2	Uncharacterized protein.	P-loop containing nucleoside triphosphate hydrolase superfamily protein.	0.740
A0A1D6DZN4	A0A1D6EZS9	A0A1D6DZN4	A0A1D6EZS9	Uncharacterized protein.	Uncharacterized protein.	0.904
A0A1D6DZN4	A0A1D6FA14	A0A1D6DZN4	A0A1D6FA14	Uncharacterized protein.	U3 small nucleolar RNA-associated protein 6.	0.942
A0A1D6DZN4	A0A1D6FF89	A0A1D6DZN4	A0A1D6FF89	Uncharacterized protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.570
A0A1D6DZN4	A0A1D6FL68	A0A1D6DZN4	A0A1D6FL68	Uncharacterized protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.949
A0A1D6DZN4	A0A1D6FND5	A0A1D6DZN4	A0A1D6FND5	Uncharacterized protein.	Sas10/Utp3/C1D family.	0.875
A0A1D6DZN4	A0A1D6GL56	A0A1D6DZN4	A0A1D6GL56	Uncharacterized protein.	Pre-rRNA-processing protein TSR2.	0.519
A0A1D6DZN4	A0A1D6GW55	A0A1D6DZN4	A0A1D6GW55	Uncharacterized protein.	KRR1 family protein.	0.674
A0A1D6DZN4	A0A1D6HJM8	A0A1D6DZN4	A0A1D6HJM8	Uncharacterized protein.	ATP-dependent RNA helicase DEAH13.	0.972
A0A1D6DZN4	A0A1D6HWX1	A0A1D6DZN4	A0A1D6HWX1	Uncharacterized protein.	Ankyrin repeat family protein.	0.450
A0A1D6DZN4	A0A1D6HZ71	A0A1D6DZN4	A0A1D6HZ71	Uncharacterized protein.	Sas10/Utp3/C1D family.	0.875
A0A1D6DZN4	A0A1D6I1X5	A0A1D6DZN4	A0A1D6I1X5	Uncharacterized protein.	Testis intracellular mediator protein.	0.450
A0A1D6DZN4	A0A1D6I954	A0A1D6DZN4	A0A1D6I954	Uncharacterized protein.	Testis intracellular mediator protein.	0.450
A0A1D6DZN4	A0A1D6ILC9	A0A1D6DZN4	A0A1D6ILC9	Uncharacterized protein.	DEAD-box ATP-dependent RNA helicase 57.	0.796
A0A1D6DZN4	A0A1D6IUS2	A0A1D6DZN4	A0A1D6IUS2	Uncharacterized protein.	Uncharacterized protein.	0.570
A0A1D6DZN4	A0A1D6JDC4	A0A1D6DZN4	A0A1D6JDC4	Uncharacterized protein.	Transducin family protein / WD-40 repeat family protein.	0.906
A0A1D6DZN4	A0A1D6JNW9	A0A1D6DZN4	A0A1D6JNW9	Uncharacterized protein.	Transducin family protein / WD-40 repeat family protein.	0.955
A0A1D6DZN4	A0A1D6JPY6	A0A1D6DZN4	A0A1D6JPY6	Uncharacterized protein.	40S ribosomal protein S28.	0.817