6 items (Zea mays) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B6T5J1_MAIZE	Protein YIPF. (258 aa)
	A0A096Q578	Protein YIPF. (258 aa)
	A0A1D6G7X0	Protein YIPF. (359 aa)
	A0A1D6M5F8	Protein YIPF. (275 aa)
	A0A1D6PYC9	Plant-specific TFIIB-related protein PTF2. (587 aa)
	Cl38374_1a	Protein YIPF. (276 aa)

Your Current Organism:

Zea mays

NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A096Q578	A0A1D6G7X0	A0A096Q578	A0A1D6G7X0	Protein YIPF.	Protein YIPF.	0.456
A0A096Q578	A0A1D6M5F8	A0A096Q578	A0A1D6M5F8	Protein YIPF.	Protein YIPF.	0.456
A0A096Q578	A0A1D6PYC9	A0A096Q578	A0A1D6PYC9	Protein YIPF.	Plant-specific TFIIB-related protein PTF2.	0.456
A0A096Q578	Cl38374_1a	A0A096Q578	B4FUR9	Protein YIPF.	Protein YIPF.	0.456
A0A1D6G7X0	A0A096Q578	A0A1D6G7X0	A0A096Q578	Protein YIPF.	Protein YIPF.	0.456
A0A1D6G7X0	B6T5J1_MAIZE	A0A1D6G7X0	B6T5J1	Protein YIPF.	Protein YIPF.	0.456
A0A1D6M5F8	A0A096Q578	A0A1D6M5F8	A0A096Q578	Protein YIPF.	Protein YIPF.	0.456
A0A1D6M5F8	B6T5J1_MAIZE	A0A1D6M5F8	B6T5J1	Protein YIPF.	Protein YIPF.	0.456
A0A1D6PYC9	A0A096Q578	A0A1D6PYC9	A0A096Q578	Plant-specific TFIIB-related protein PTF2.	Protein YIPF.	0.456
A0A1D6PYC9	B6T5J1_MAIZE	A0A1D6PYC9	B6T5J1	Plant-specific TFIIB-related protein PTF2.	Protein YIPF.	0.456
B6T5J1_MAIZE	A0A1D6G7X0	B6T5J1	A0A1D6G7X0	Protein YIPF.	Protein YIPF.	0.456
B6T5J1_MAIZE	A0A1D6M5F8	B6T5J1	A0A1D6M5F8	Protein YIPF.	Protein YIPF.	0.456
B6T5J1_MAIZE	A0A1D6PYC9	B6T5J1	A0A1D6PYC9	Protein YIPF.	Plant-specific TFIIB-related protein PTF2.	0.456
B6T5J1_MAIZE	Cl38374_1a	B6T5J1	B4FUR9	Protein YIPF.	Protein YIPF.	0.456
Cl38374_1a	A0A096Q578	B4FUR9	A0A096Q578	Protein YIPF.	Protein YIPF.	0.456
Cl38374_1a	B6T5J1_MAIZE	B4FUR9	B6T5J1	Protein YIPF.	Protein YIPF.	0.456