(25 nodes) (2012) Rapid sequencing of the bamboo mitochondrial genome using Illumina technology and parallel episodic evolution of organelle genomes in grasses. network (Zea mays)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rps19-A	30S ribosomal protein S19, chloroplastic; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (93 aa)
	rps14	30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles. (103 aa)
	rpl16	50S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family. (136 aa)
	rpl14	50S ribosomal protein L14, chloroplastic; Binds to 23S rRNA. (123 aa)
	rps2	30S ribosomal protein S2, chloroplastic. (236 aa)
	rpl2-A	50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family. (273 aa)
	nad6	NADH-ubiquinone oxidoreductase chain 6; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (220 aa)
	cox2	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1. (260 aa)
	nad1	NADH-ubiquinone oxidoreductase chain 1; Belongs to the complex I subunit 1 family. (325 aa)
	atp6	ATP synthase subunit a. (395 aa)
	ccmB	Cytochrome c biogenesis B. (206 aa)
	ccmFN	Cytochrome c biogenesis FN. (620 aa)
	rps1	Ribosomal protein S1. (172 aa)
	mat-r	Maturase. (673 aa)
	nad3	NADH-ubiquinone oxidoreductase chain 3; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (118 aa)
	nad7	NADH dehydrogenase subunit 7; Belongs to the complex I 49 kDa subunit family. (394 aa)
	atp8	ATPase subunit 8. (153 aa)
	nad5	NADH-ubiquinone oxidoreductase chain 5; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (670 aa)
	ccmC	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein; May be involved in the export of heme to the mitochondrion for the biogenesis of c-type cytochromes. Belongs to the CcmC/CycZ/HelC family. (240 aa)
	nad9	NADH dehydrogenase subunit 9. (190 aa)
	ccmFC	Cytochrome c biogenesis FC. (433 aa)
	nad4	NADH-ubiquinone oxidoreductase chain 4; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (495 aa)
	nad4L	NADH dehydrogenase subunit 4L. (100 aa)
	atp9	ATP synthase subunit 9, mitochondrial; Belongs to the ATPase C chain family. (74 aa)
	RPS10	40S ribosomal protein S10 mitochondrial. (109 aa)

Your Current Organism:

Zea mays

NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPS10	atp6	Q9FUT8	Q6R982	40S ribosomal protein S10 mitochondrial.	ATP synthase subunit a.	0.551
RPS10	atp8	Q9FUT8	Q6R9G5	40S ribosomal protein S10 mitochondrial.	ATPase subunit 8.	0.760
RPS10	atp9	Q9FUT8	Q71QT0	40S ribosomal protein S10 mitochondrial.	ATP synthase subunit 9, mitochondrial; Belongs to the ATPase C chain family.	0.671
RPS10	ccmB	Q9FUT8	Q6R9C7	40S ribosomal protein S10 mitochondrial.	Cytochrome c biogenesis B.	0.611
RPS10	ccmC	Q9FUT8	Q6R9H6	40S ribosomal protein S10 mitochondrial.	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein; May be involved in the export of heme to the mitochondrion for the biogenesis of c-type cytochromes. Belongs to the CcmC/CycZ/HelC family.	0.594
RPS10	ccmFC	Q9FUT8	Q6R9L3	40S ribosomal protein S10 mitochondrial.	Cytochrome c biogenesis FC.	0.669
RPS10	ccmFN	Q9FUT8	Q6R9E9	40S ribosomal protein S10 mitochondrial.	Cytochrome c biogenesis FN.	0.607
RPS10	cox2	Q9FUT8	Q52R09	40S ribosomal protein S10 mitochondrial.	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	0.660
RPS10	mat-r	Q9FUT8	Q6R9F2	40S ribosomal protein S10 mitochondrial.	Maturase.	0.771
RPS10	nad1	Q9FUT8	Q6R977	40S ribosomal protein S10 mitochondrial.	NADH-ubiquinone oxidoreductase chain 1; Belongs to the complex I subunit 1 family.	0.677
RPS10	nad3	Q9FUT8	Q6R9F4	40S ribosomal protein S10 mitochondrial.	NADH-ubiquinone oxidoreductase chain 3; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.673
RPS10	nad4	Q9FUT8	Q6R9L4	40S ribosomal protein S10 mitochondrial.	NADH-ubiquinone oxidoreductase chain 4; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.606
RPS10	nad4L	Q9FUT8	Q6R9N1	40S ribosomal protein S10 mitochondrial.	NADH dehydrogenase subunit 4L.	0.660
RPS10	nad5	Q9FUT8	Q6R9H4	40S ribosomal protein S10 mitochondrial.	NADH-ubiquinone oxidoreductase chain 5; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.525
RPS10	nad6	Q9FUT8	P92799	40S ribosomal protein S10 mitochondrial.	NADH-ubiquinone oxidoreductase chain 6; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.668
RPS10	nad7	Q9FUT8	Q6R9G1	40S ribosomal protein S10 mitochondrial.	NADH dehydrogenase subunit 7; Belongs to the complex I 49 kDa subunit family.	0.669
RPS10	nad9	Q9FUT8	Q6R9L0	40S ribosomal protein S10 mitochondrial.	NADH dehydrogenase subunit 9.	0.682
RPS10	rpl14	Q9FUT8	P08529	40S ribosomal protein S10 mitochondrial.	50S ribosomal protein L14, chloroplastic; Binds to 23S rRNA.	0.627
RPS10	rpl16	Q9FUT8	P08528	40S ribosomal protein S10 mitochondrial.	50S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family.	0.800
RPS10	rpl2-A	Q9FUT8	P17788	40S ribosomal protein S10 mitochondrial.	50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family.	0.740