5 items (Zea mays) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SnrK1	Non-specific serine/threonine protein kinase. (509 aa)
	SnRK2.2	Serine/threonine-protein kinase SRK2C; Belongs to the protein kinase superfamily. (345 aa)
	PP2C	2C-type protein phosphatase protein. (388 aa)
	B4FIV4_MAIZE	Serine/threonine-protein kinase SRK2C; Belongs to the protein kinase superfamily. (333 aa)
	NAC1	NAC domain-containing protein 67. (312 aa)

Your Current Organism:

Zea mays

NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B4FIV4_MAIZE	PP2C	B4FIV4	A3F4K2	Serine/threonine-protein kinase SRK2C; Belongs to the protein kinase superfamily.	2C-type protein phosphatase protein.	0.802
NAC1	PP2C	B5A4B4	A3F4K2	NAC domain-containing protein 67.	2C-type protein phosphatase protein.	0.660
PP2C	B4FIV4_MAIZE	A3F4K2	B4FIV4	2C-type protein phosphatase protein.	Serine/threonine-protein kinase SRK2C; Belongs to the protein kinase superfamily.	0.802
PP2C	NAC1	A3F4K2	B5A4B4	2C-type protein phosphatase protein.	NAC domain-containing protein 67.	0.660
PP2C	SnRK2.2	A3F4K2	A0A1D6IJY6	2C-type protein phosphatase protein.	Serine/threonine-protein kinase SRK2C; Belongs to the protein kinase superfamily.	0.912
PP2C	SnrK1	A3F4K2	Q6RXY1	2C-type protein phosphatase protein.	Non-specific serine/threonine protein kinase.	0.802
SnRK2.2	PP2C	A0A1D6IJY6	A3F4K2	Serine/threonine-protein kinase SRK2C; Belongs to the protein kinase superfamily.	2C-type protein phosphatase protein.	0.912
SnrK1	PP2C	Q6RXY1	A3F4K2	Non-specific serine/threonine protein kinase.	2C-type protein phosphatase protein.	0.802