19 items (Zea mays) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	IDP798	Cleavage and polyadenylation specificity factor subunit 2. (766 aa)
	Si683029c11	DNA cross-link repair protein SNM1. (505 aa)
	A0A1D6EBI0	Metallo-hydrolase/oxidoreductase superfamily protein. (353 aa)
	A0A1D6EQY9	Sterile alpha motif (SAM) domain-containing protein; Belongs to the GroES chaperonin family. (1047 aa)
	A0A1D6FH69	tRNAse Z4. (998 aa)
	AY110374	Hydroxyacylglutathione hydrolase 2 mitochondrial. (337 aa)
	A0A1D6K1V4	Hydroxyacylglutathione hydrolase cytoplasmic. (276 aa)
	Cl2746_1	Metallo-hydrolase/oxidoreductase superfamily protein. (526 aa)
	A0A1D6NFC7	DNA ligase. (1397 aa)
	A0A1D6NGC6	Persulfide dioxygenase ETHE1 homolog mitochondrial. (329 aa)
	A0A1D6NJL4	Cleavage and polyadenylation specificity factor subunit 3-II. (558 aa)
	C4J9M0_MAIZE	Metallo-hydrolase/oxidoreductase superfamily protein. (374 aa)
	Si605026c07	DNA repair metallo-beta-lactamase family protein. (438 aa)
	AY109916	Cleavage and polyadenylation specificity factor subunit 3-I. (697 aa)
	B6U1D4_MAIZE	Cleavage and polyadenylation specificity factor, 73 kDa subunit. (694 aa)
	B4FSG2_MAIZE	Metallo-hydrolase/oxidoreductase superfamily protein. (328 aa)
	Si618065b11	Nuclear ribonuclease Z. (302 aa)
	A0A1D6QRT7	RNA-metabolising metallo-beta-lactamase family protein. (874 aa)
	A0A1D6QA38	Zn-dependent hydrolase, including glyoxylase. (339 aa)

Your Current Organism:

Zea mays

NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1D6EQY9	A0A1D6NFC7	A0A1D6EQY9	A0A1D6NFC7	Sterile alpha motif (SAM) domain-containing protein; Belongs to the GroES chaperonin family.	DNA ligase.	0.492
A0A1D6FH69	A0A1D6NFC7	A0A1D6FH69	A0A1D6NFC7	tRNAse Z4.	DNA ligase.	0.455
A0A1D6FH69	A0A1D6NJL4	A0A1D6FH69	A0A1D6NJL4	tRNAse Z4.	Cleavage and polyadenylation specificity factor subunit 3-II.	0.455
A0A1D6NFC7	A0A1D6EQY9	A0A1D6NFC7	A0A1D6EQY9	DNA ligase.	Sterile alpha motif (SAM) domain-containing protein; Belongs to the GroES chaperonin family.	0.492
A0A1D6NFC7	A0A1D6FH69	A0A1D6NFC7	A0A1D6FH69	DNA ligase.	tRNAse Z4.	0.455
A0A1D6NFC7	A0A1D6QRT7	A0A1D6NFC7	A0A1D6QRT7	DNA ligase.	RNA-metabolising metallo-beta-lactamase family protein.	0.466
A0A1D6NFC7	IDP798	A0A1D6NFC7	A0A1D6NN32	DNA ligase.	Cleavage and polyadenylation specificity factor subunit 2.	0.488
A0A1D6NFC7	Si618065b11	A0A1D6NFC7	B4FNQ3	DNA ligase.	Nuclear ribonuclease Z.	0.455
A0A1D6NJL4	A0A1D6FH69	A0A1D6NJL4	A0A1D6FH69	Cleavage and polyadenylation specificity factor subunit 3-II.	tRNAse Z4.	0.455
A0A1D6NJL4	IDP798	A0A1D6NJL4	A0A1D6NN32	Cleavage and polyadenylation specificity factor subunit 3-II.	Cleavage and polyadenylation specificity factor subunit 2.	0.934
A0A1D6QRT7	A0A1D6NFC7	A0A1D6QRT7	A0A1D6NFC7	RNA-metabolising metallo-beta-lactamase family protein.	DNA ligase.	0.466
A0A1D6QRT7	IDP798	A0A1D6QRT7	A0A1D6NN32	RNA-metabolising metallo-beta-lactamase family protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.961
AY109916	B6U1D4_MAIZE	B8A148	B6U1D4	Cleavage and polyadenylation specificity factor subunit 3-I.	Cleavage and polyadenylation specificity factor, 73 kDa subunit.	0.900
AY109916	IDP798	B8A148	A0A1D6NN32	Cleavage and polyadenylation specificity factor subunit 3-I.	Cleavage and polyadenylation specificity factor subunit 2.	0.995
B6U1D4_MAIZE	AY109916	B6U1D4	B8A148	Cleavage and polyadenylation specificity factor, 73 kDa subunit.	Cleavage and polyadenylation specificity factor subunit 3-I.	0.900
B6U1D4_MAIZE	IDP798	B6U1D4	A0A1D6NN32	Cleavage and polyadenylation specificity factor, 73 kDa subunit.	Cleavage and polyadenylation specificity factor subunit 2.	0.995
IDP798	A0A1D6NFC7	A0A1D6NN32	A0A1D6NFC7	Cleavage and polyadenylation specificity factor subunit 2.	DNA ligase.	0.488
IDP798	A0A1D6NJL4	A0A1D6NN32	A0A1D6NJL4	Cleavage and polyadenylation specificity factor subunit 2.	Cleavage and polyadenylation specificity factor subunit 3-II.	0.934
IDP798	A0A1D6QRT7	A0A1D6NN32	A0A1D6QRT7	Cleavage and polyadenylation specificity factor subunit 2.	RNA-metabolising metallo-beta-lactamase family protein.	0.961
IDP798	AY109916	A0A1D6NN32	B8A148	Cleavage and polyadenylation specificity factor subunit 2.	Cleavage and polyadenylation specificity factor subunit 3-I.	0.995