STRINGSTRING
Shal_1448 Shal_1448 Shal_0387 Shal_0387 Shal_0378 Shal_0378 Shal_0294 Shal_0294 Shal_0223 Shal_0223 Shal_2098 Shal_2098 Shal_2121 Shal_2121 Shal_2900 Shal_2900 Shal_3395 Shal_3395 Shal_2096 Shal_2096 Shal_4239 Shal_4239 Shal_1832 Shal_1832 acsA acsA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Shal_1448Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. (566 aa)
Shal_0387PFAM: AMP-dependent synthetase and ligase; KEGG: slo:Shew_3502 AMP-dependent synthetase and ligase. (551 aa)
Shal_0378KEGG: slo:Shew_3514 hypothetical protein. (459 aa)
Shal_0294TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: shn:Shewana3_3968 O-succinylbenzoate-CoA ligase. (510 aa)
Shal_0223PFAM: AMP-dependent synthetase and ligase; KEGG: slo:Shew_2673 AMP-dependent synthetase and ligase. (517 aa)
Shal_2098PFAM: AMP-dependent synthetase and ligase; KEGG: pha:PSHAa2132 acyl-CoA synthase. (546 aa)
Shal_2121PFAM: AMP-dependent synthetase and ligase; KEGG: pha:PSHAa0896 acyl-CoA synthase. (621 aa)
Shal_2900PFAM: AMP-dependent synthetase and ligase; KEGG: sbm:Shew185_2844 AMP-dependent synthetase and ligase. (634 aa)
Shal_3395PFAM: AMP-dependent synthetase and ligase; KEGG: shw:Sputw3181_3197 AMP-dependent synthetase and ligase. (532 aa)
Shal_2096PFAM: AMP-dependent synthetase and ligase; KEGG: pha:PSHAa2134 AMP-binding enzyme. (566 aa)
Shal_4239Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. (572 aa)
Shal_1832PFAM: AMP-dependent synthetase and ligase; KEGG: slo:Shew_2188 AMP-dependent synthetase and ligase. (557 aa)
acsAacetate--CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. (650 aa)
Your Current Organism:
Shewanella halifaxensis
NCBI taxonomy Id: 458817
Other names: S. halifaxensis HAW-EB4, Shewanella halifaxensis HAW-EB4, Shewanella halifaxensis str. HAW-EB4, Shewanella halifaxensis strain HAW-EB4
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