(16 nodes) NADH dehydrogenase complex network (Trichinella britovi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial. (430 aa)
	mt:ND5	NADH-ubiquinone oxidoreductase chain 5. (513 aa)
	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial; Belongs to the complex I 75 kDa subunit family. (731 aa)
	Ndufa7	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7. (150 aa)
	T03_4994	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7. (131 aa)
	Ndufa8	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (199 aa)
	T03_5958	Uncharacterized protein. (141 aa)
	ND42	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial. (451 aa)
	T03_7644	Uncharacterized protein. (193 aa)
	NDUFA2	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2. (269 aa)
	nduf-7	Putative NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial; Belongs to the complex I 20 kDa subunit family. (527 aa)
	NDUFB5	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial. (180 aa)
	T03_11396	Uncharacterized protein. (103 aa)
	NDUFV1	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. (477 aa)
	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial; Belongs to the complex I 30 kDa subunit family. (371 aa)
	NDUFA13	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13. (177 aa)

Your Current Organism:

Trichinella britovi

NCBI taxonomy Id: 45882
Other names: T. britovi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ND42	NDUFA13	A0A0V1CPR4	A0A0V1DDE0	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13.	0.992
ND42	NDUFA2	A0A0V1CPR4	A0A0V1CV09	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2.	0.998
ND42	NDUFA9	A0A0V1CPR4	A0A0V1CA79	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial.	0.999
ND42	NDUFB5	A0A0V1CPR4	A0A0V1D4Y9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial.	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial.	0.997
ND42	NDUFS1	A0A0V1CPR4	A0A0V1CH04	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial.	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial; Belongs to the complex I 75 kDa subunit family.	0.993
ND42	NDUFS3	A0A0V1CPR4	A0A0V1DB04	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial.	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial; Belongs to the complex I 30 kDa subunit family.	0.997
ND42	NDUFV1	A0A0V1CPR4	A0A0V1D666	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial.	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	0.998
ND42	Ndufa7	A0A0V1CPR4	A0A0V1CJ63	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7.	0.990
ND42	Ndufa8	A0A0V1CPR4	A0A0V1CK29	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.992
ND42	T03_11396	A0A0V1CPR4	A0A0V1D5X0	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial.	Uncharacterized protein.	0.987
ND42	T03_4994	A0A0V1CPR4	A0A0V1CJA0	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial.	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7.	0.993
ND42	T03_5958	A0A0V1CPR4	A0A0V1CMD3	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial.	Uncharacterized protein.	0.993
ND42	T03_7644	A0A0V1CPR4	A0A0V1CPT8	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial.	Uncharacterized protein.	0.988
ND42	mt:ND5	A0A0V1CPR4	A0A0V1CBY4	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial.	NADH-ubiquinone oxidoreductase chain 5.	0.980
ND42	nduf-7	A0A0V1CPR4	A0A0V1CVF6	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial.	Putative NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial; Belongs to the complex I 20 kDa subunit family.	0.995
NDUFA13	ND42	A0A0V1DDE0	A0A0V1CPR4	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial.	0.992
NDUFA13	NDUFA2	A0A0V1DDE0	A0A0V1CV09	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2.	0.999
NDUFA13	NDUFA9	A0A0V1DDE0	A0A0V1CA79	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial.	0.999
NDUFA13	NDUFB5	A0A0V1DDE0	A0A0V1D4Y9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13.	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial.	0.999
NDUFA13	NDUFS1	A0A0V1DDE0	A0A0V1CH04	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13.	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial; Belongs to the complex I 75 kDa subunit family.	0.998