25 items (Thecamonas trahens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMSG_11749	Sm domain-containing protein. (81 aa)
	AMSG_02462	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (103 aa)
	AMSG_03897	DEAD-box ATP-dependent RNA helicase 21; Belongs to the DEAD box helicase family. (636 aa)
	AMSG_03761	Spliceosomal protein on the X. (323 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	AMSG_00434	Uncharacterized protein. (461 aa)
	AMSG_04178	Small nuclear ribonucleoprotein SmG. (73 aa)
	AMSG_05062	Small nuclear ribonucleoprotein Sm D3. (105 aa)
	AMSG_06113	Small nuclear riboprotein. (100 aa)
	AMSG_05327	Small nuclear ribonucleoprotein Sm D2. (104 aa)
	AMSG_00624	Elongation factor tu GTP-binding domain-containing protein 2. (1088 aa)
	AMSG_00821	Pre-mRNA splicing protein. (142 aa)
	AMSG_12221	Uncharacterized protein. (1066 aa)
	AMSG_09202	Pre-mRNA-processing-splicing factor 8. (2345 aa)
	AMSG_08862	Zinc finger protein. (235 aa)
	AMSG_01299	U2 small nuclear ribonucleoprotein A. (268 aa)
	AMSG_09035	Splicing factor 3B subunit 1. (1152 aa)
	AMSG_09989	Uncharacterized protein. (1263 aa)
	AMSG_09474	UPF0692 protein. (224 aa)
	AMSG_10590	Pre-mRNA-splicing factor sap114. (736 aa)
	AMSG_10920	U5 small nuclear ribonucleoprotein helicase. (2137 aa)
	AMSG_11199	CPSF A subunit. (1205 aa)
	AMSG_11215	SF3B2 protein. (526 aa)
	AMSG_02093	U1 small nuclear ribonucleoprotein A. (228 aa)
	AMSG_01948	PrpF31 U4/U6*U5 snRNP-associated pre-mRNA processing factor 31. (468 aa)

Your Current Organism:

Thecamonas trahens

NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMSG_00434	AMSG_00624	A0A0L0D9D1	A0A0L0DE68	Uncharacterized protein.	Elongation factor tu GTP-binding domain-containing protein 2.	0.992
AMSG_00434	AMSG_00821	A0A0L0D9D1	A0A0L0DEU3	Uncharacterized protein.	Pre-mRNA splicing protein.	0.963
AMSG_00434	AMSG_01299	A0A0L0D9D1	A0A0L0DMR3	Uncharacterized protein.	U2 small nuclear ribonucleoprotein A.	0.863
AMSG_00434	AMSG_01948	A0A0L0D9D1	A0A0L0DVY6	Uncharacterized protein.	PrpF31 U4/U6*U5 snRNP-associated pre-mRNA processing factor 31.	0.999
AMSG_00434	AMSG_02093	A0A0L0D9D1	A0A0L0DVI8	Uncharacterized protein.	U1 small nuclear ribonucleoprotein A.	0.753
AMSG_00434	AMSG_02462	A0A0L0D9D1	A0A0L0D532	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.968
AMSG_00434	AMSG_03761	A0A0L0D9D1	A0A0L0D7P5	Uncharacterized protein.	Spliceosomal protein on the X.	0.920
AMSG_00434	AMSG_03897	A0A0L0D9D1	A0A0L0D5M1	Uncharacterized protein.	DEAD-box ATP-dependent RNA helicase 21; Belongs to the DEAD box helicase family.	0.964
AMSG_00434	AMSG_04178	A0A0L0D9D1	A0A0L0D9G4	Uncharacterized protein.	Small nuclear ribonucleoprotein SmG.	0.968
AMSG_00434	AMSG_05062	A0A0L0D9D1	A0A0L0DA44	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3.	0.964
AMSG_00434	AMSG_05327	A0A0L0D9D1	A0A0L0DDC2	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.979
AMSG_00434	AMSG_06113	A0A0L0D9D1	A0A0L0DBW1	Uncharacterized protein.	Small nuclear riboprotein.	0.955
AMSG_00434	AMSG_08862	A0A0L0D9D1	A0A0L0DM19	Uncharacterized protein.	Zinc finger protein.	0.940
AMSG_00434	AMSG_09035	A0A0L0D9D1	A0A0L0DN87	Uncharacterized protein.	Splicing factor 3B subunit 1.	0.942
AMSG_00434	AMSG_09202	A0A0L0D9D1	A0A0L0DLV6	Uncharacterized protein.	Pre-mRNA-processing-splicing factor 8.	0.998
AMSG_00434	AMSG_09474	A0A0L0D9D1	A0A0L0DQP4	Uncharacterized protein.	UPF0692 protein.	0.924
AMSG_00434	AMSG_09989	A0A0L0D9D1	A0A0L0DPL6	Uncharacterized protein.	Uncharacterized protein.	0.950
AMSG_00434	AMSG_10590	A0A0L0D9D1	A0A0L0DRP6	Uncharacterized protein.	Pre-mRNA-splicing factor sap114.	0.922
AMSG_00434	AMSG_10920	A0A0L0D9D1	A0A0L0DSN4	Uncharacterized protein.	U5 small nuclear ribonucleoprotein helicase.	0.998
AMSG_00434	AMSG_11199	A0A0L0D9D1	A0A0L0DTV8	Uncharacterized protein.	CPSF A subunit.	0.902