STRINGSTRING
AMSG_02462 AMSG_02462 AMSG_03417 AMSG_03417 AMSG_01948 AMSG_01948 LSM3 LSM3 AMSG_11215 AMSG_11215 AMSG_12309 AMSG_12309 AMSG_09474 AMSG_09474 AMSG_00861 AMSG_00861 AMSG_05327 AMSG_05327 AMSG_05062 AMSG_05062 AMSG_04178 AMSG_04178 LSM8 LSM8
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AMSG_02462Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (103 aa)
AMSG_03417RRM domain-containing protein. (238 aa)
AMSG_01948PrpF31 U4/U6*U5 snRNP-associated pre-mRNA processing factor 31. (468 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (83 aa)
AMSG_11215SF3B2 protein. (526 aa)
AMSG_12309WD_REPEATS_REGION domain-containing protein; Belongs to the complex I LYR family. (286 aa)
AMSG_09474UPF0692 protein. (224 aa)
AMSG_00861PRP38 pre-mRNA processing factor 38 domain containing A. (343 aa)
AMSG_05327Small nuclear ribonucleoprotein Sm D2. (104 aa)
AMSG_05062Small nuclear ribonucleoprotein Sm D3. (105 aa)
AMSG_04178Small nuclear ribonucleoprotein SmG. (73 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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