36 items (Thecamonas trahens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (83 aa)
	AMSG_11388	Pre-mRNA-processing factor 17. (532 aa)
	AMSG_11215	SF3B2 protein. (526 aa)
	AMSG_11060	Uncharacterized protein. (318 aa)
	AMSG_10590	Pre-mRNA-splicing factor sap114. (736 aa)
	AMSG_09474	UPF0692 protein. (224 aa)
	AMSG_09713	Peptidyl-prolyl cis-trans isomerase 4. (492 aa)
	AMSG_09678	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (120 aa)
	AMSG_09989	Uncharacterized protein. (1263 aa)
	AMSG_09035	Splicing factor 3B subunit 1. (1152 aa)
	AMSG_01218	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (165 aa)
	AMSG_08862	Zinc finger protein. (235 aa)
	AMSG_09202	Pre-mRNA-processing-splicing factor 8. (2345 aa)
	AMSG_08189	PPIase cyclophilin-type domain-containing protein. (330 aa)
	AMSG_07947	Pre-mRNA splicing factor prp46. (454 aa)
	AMSG_00641	Pre-mRNA-splicing factor SYF2. (301 aa)
	AMSG_07064	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (206 aa)
	AMSG_07210	Peptidyl-prolyl cis-trans isomerase cyp15. (655 aa)
	AMSG_07094	WD_REPEATS_REGION domain-containing protein. (833 aa)
	AMSG_00748	Peptidyl-prolyl cis-trans isomerase. (200 aa)
	AMSG_00624	Elongation factor tu GTP-binding domain-containing protein 2. (1088 aa)
	AMSG_05327	Small nuclear ribonucleoprotein Sm D2. (104 aa)
	AMSG_05725	Cyclophilin-type peptidylprolyl cis-trans isomerase. (274 aa)
	AMSG_06113	Small nuclear riboprotein. (100 aa)
	AMSG_04793	RNA splicing factor. (918 aa)
	AMSG_00032	Uncharacterized protein. (652 aa)
	AMSG_05062	Small nuclear ribonucleoprotein Sm D3. (105 aa)
	AMSG_04178	Small nuclear ribonucleoprotein SmG. (73 aa)
	AMSG_00468	Uncharacterized protein. (880 aa)
	AMSG_00467	Intron-binding protein aquarius. (1504 aa)
	AMSG_04340	Uncharacterized protein. (262 aa)
	AMSG_04137	U5 snRNP complex subunit. (368 aa)
	AMSG_03726	Crooked neck. (753 aa)
	AMSG_11749	Sm domain-containing protein. (81 aa)
	AMSG_02860	Wd-repeat protein. (278 aa)
	AMSG_02789	Uncharacterized protein. (325 aa)

Your Current Organism:

Thecamonas trahens

NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMSG_00032	AMSG_00467	A0A0L0D108	A0A0L0D8Y7	Uncharacterized protein.	Intron-binding protein aquarius.	0.774
AMSG_00032	AMSG_00468	A0A0L0D108	A0A0L0D9F9	Uncharacterized protein.	Uncharacterized protein.	0.703
AMSG_00032	AMSG_00624	A0A0L0D108	A0A0L0DE68	Uncharacterized protein.	Elongation factor tu GTP-binding domain-containing protein 2.	0.930
AMSG_00032	AMSG_00641	A0A0L0D108	A0A0L0DGL7	Uncharacterized protein.	Pre-mRNA-splicing factor SYF2.	0.559
AMSG_00032	AMSG_00748	A0A0L0D108	A0A0L0DEG6	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase.	0.426
AMSG_00032	AMSG_03726	A0A0L0D108	A0A0L0D4K6	Uncharacterized protein.	Crooked neck.	0.777
AMSG_00032	AMSG_04178	A0A0L0D108	A0A0L0D9G4	Uncharacterized protein.	Small nuclear ribonucleoprotein SmG.	0.849
AMSG_00032	AMSG_04340	A0A0L0D108	A0A0L0D7E8	Uncharacterized protein.	Uncharacterized protein.	0.673
AMSG_00032	AMSG_04793	A0A0L0D108	A0A0L0DAL9	Uncharacterized protein.	RNA splicing factor.	0.818
AMSG_00032	AMSG_05062	A0A0L0D108	A0A0L0DA44	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3.	0.841
AMSG_00032	AMSG_05327	A0A0L0D108	A0A0L0DDC2	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.911
AMSG_00032	AMSG_06113	A0A0L0D108	A0A0L0DBW1	Uncharacterized protein.	Small nuclear riboprotein.	0.704
AMSG_00032	AMSG_07210	A0A0L0D108	A0A0L0DFL5	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase cyp15.	0.513
AMSG_00032	AMSG_07947	A0A0L0D108	A0A0L0DHZ8	Uncharacterized protein.	Pre-mRNA splicing factor prp46.	0.674
AMSG_00032	AMSG_08189	A0A0L0D108	A0A0L0DI80	Uncharacterized protein.	PPIase cyclophilin-type domain-containing protein.	0.528
AMSG_00032	AMSG_08862	A0A0L0D108	A0A0L0DM19	Uncharacterized protein.	Zinc finger protein.	0.565
AMSG_00032	AMSG_09035	A0A0L0D108	A0A0L0DN87	Uncharacterized protein.	Splicing factor 3B subunit 1.	0.560
AMSG_00032	AMSG_09202	A0A0L0D108	A0A0L0DLV6	Uncharacterized protein.	Pre-mRNA-processing-splicing factor 8.	0.927
AMSG_00032	AMSG_09474	A0A0L0D108	A0A0L0DQP4	Uncharacterized protein.	UPF0692 protein.	0.536
AMSG_00032	AMSG_09678	A0A0L0D108	A0A0L0DPS7	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.685