STRINGSTRING
AMSG_11737 AMSG_11737 AMSG_02093 AMSG_02093 AMSG_09474 AMSG_09474 AMSG_09504 AMSG_09504 AMSG_06712 AMSG_06712 AMSG_00821 AMSG_00821 AMSG_06113 AMSG_06113 AMSG_00434 AMSG_00434 AMSG_02462 AMSG_02462
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AMSG_11737RRM domain-containing protein. (206 aa)
AMSG_02093U1 small nuclear ribonucleoprotein A. (228 aa)
AMSG_09474UPF0692 protein. (224 aa)
AMSG_09504Uncharacterized protein. (500 aa)
AMSG_06712U4/U6.U5 tri-snRNP-associated protein. (515 aa)
AMSG_00821Pre-mRNA splicing protein. (142 aa)
AMSG_06113Small nuclear riboprotein. (100 aa)
AMSG_00434Uncharacterized protein. (461 aa)
AMSG_02462Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (103 aa)
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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