15 items (Thecamonas trahens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (139 aa)
	AMSG_11749	Sm domain-containing protein. (81 aa)
	AMSG_02462	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (103 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	AMSG_04178	Small nuclear ribonucleoprotein SmG. (73 aa)
	AMSG_05117	Uncharacterized protein. (616 aa)
	AMSG_05062	Small nuclear ribonucleoprotein Sm D3. (105 aa)
	AMSG_06113	Small nuclear riboprotein. (100 aa)
	AMSG_06360	U6 snRNA-associated Sm-like protein LSm6. (76 aa)
	AMSG_05327	Small nuclear ribonucleoprotein Sm D2. (104 aa)
	AMSG_00604	Uncharacterized protein. (394 aa)
	AMSG_08565	Sm domain-containing protein. (227 aa)
	AMSG_08096	Uncharacterized protein. (752 aa)
	AMSG_10727	Uncharacterized protein. (132 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (83 aa)

Your Current Organism:

Thecamonas trahens

NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMSG_00604	AMSG_06113	A0A0L0DE03	A0A0L0DBW1	Uncharacterized protein.	Small nuclear riboprotein.	0.401
AMSG_00604	LSM1	A0A0L0DE03	A0A0L0D1M0	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.606
AMSG_02462	AMSG_04178	A0A0L0D532	A0A0L0D9G4	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein SmG.	0.999
AMSG_02462	AMSG_05062	A0A0L0D532	A0A0L0DA44	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein Sm D3.	0.999
AMSG_02462	AMSG_05327	A0A0L0D532	A0A0L0DDC2	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein Sm D2.	0.999
AMSG_02462	AMSG_06113	A0A0L0D532	A0A0L0DBW1	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear riboprotein.	0.980
AMSG_02462	AMSG_06360	A0A0L0D532	A0A0L0DD04	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	U6 snRNA-associated Sm-like protein LSm6.	0.984
AMSG_02462	AMSG_08565	A0A0L0D532	A0A0L0DJW6	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Sm domain-containing protein.	0.919
AMSG_02462	AMSG_11749	A0A0L0D532	A0A0L0D2Z1	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Sm domain-containing protein.	0.999
AMSG_02462	LSM1	A0A0L0D532	A0A0L0D1M0	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.716
AMSG_02462	LSM3	A0A0L0D532	A0A0L0DVK1	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.977
AMSG_02462	LSM8	A0A0L0D532	A0A0L0D886	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.985
AMSG_04178	AMSG_02462	A0A0L0D9G4	A0A0L0D532	Small nuclear ribonucleoprotein SmG.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
AMSG_04178	AMSG_05062	A0A0L0D9G4	A0A0L0DA44	Small nuclear ribonucleoprotein SmG.	Small nuclear ribonucleoprotein Sm D3.	0.999
AMSG_04178	AMSG_05327	A0A0L0D9G4	A0A0L0DDC2	Small nuclear ribonucleoprotein SmG.	Small nuclear ribonucleoprotein Sm D2.	0.999
AMSG_04178	AMSG_06113	A0A0L0D9G4	A0A0L0DBW1	Small nuclear ribonucleoprotein SmG.	Small nuclear riboprotein.	0.967
AMSG_04178	AMSG_06360	A0A0L0D9G4	A0A0L0DD04	Small nuclear ribonucleoprotein SmG.	U6 snRNA-associated Sm-like protein LSm6.	0.987
AMSG_04178	AMSG_08565	A0A0L0D9G4	A0A0L0DJW6	Small nuclear ribonucleoprotein SmG.	Sm domain-containing protein.	0.913
AMSG_04178	AMSG_11749	A0A0L0D9G4	A0A0L0D2Z1	Small nuclear ribonucleoprotein SmG.	Sm domain-containing protein.	0.999
AMSG_04178	LSM1	A0A0L0D9G4	A0A0L0D1M0	Small nuclear ribonucleoprotein SmG.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.544