18 items (Thecamonas trahens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMSG_12403	SAP domain-containing protein. (1278 aa)
	AMSG_00088	Cleavage stimulation factor 77 kDa subunit. (744 aa)
	AMSG_11749	Sm domain-containing protein. (81 aa)
	AMSG_00312	RNA recognition domain-containing protein containing protein. (318 aa)
	AMSG_02462	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (103 aa)
	AMSG_04051	CstF-50. (464 aa)
	AMSG_04492	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (300 aa)
	AMSG_04354	Uncharacterized protein. (726 aa)
	AMSG_04178	Small nuclear ribonucleoprotein SmG. (73 aa)
	AMSG_04649	Uncharacterized protein. (1060 aa)
	AMSG_05062	Small nuclear ribonucleoprotein Sm D3. (105 aa)
	AMSG_06853	SLBP_RNA_bind domain-containing protein. (224 aa)
	AMSG_06683	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (537 aa)
	AMSG_07171	Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily. (418 aa)
	AMSG_07003	Cleavage and polyadenylation specificity factor subunit 2. (748 aa)
	AMSG_08565	Sm domain-containing protein. (227 aa)
	AMSG_09910	Uncharacterized protein. (843 aa)
	AMSG_01466	Cleavage and polyadenylation specificity factor subunit 1. (1725 aa)

Your Current Organism:

Thecamonas trahens

NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMSG_00088	AMSG_00312	A0A0L0D145	A0A0L0D4G6	Cleavage stimulation factor 77 kDa subunit.	RNA recognition domain-containing protein containing protein.	0.999
AMSG_00088	AMSG_01466	A0A0L0D145	A0A0L0DQQ5	Cleavage stimulation factor 77 kDa subunit.	Cleavage and polyadenylation specificity factor subunit 1.	0.976
AMSG_00088	AMSG_04051	A0A0L0D145	A0A0L0D609	Cleavage stimulation factor 77 kDa subunit.	CstF-50.	0.960
AMSG_00088	AMSG_04354	A0A0L0D145	A0A0L0D7G0	Cleavage stimulation factor 77 kDa subunit.	Uncharacterized protein.	0.999
AMSG_00088	AMSG_04492	A0A0L0D145	A0A0L0D799	Cleavage stimulation factor 77 kDa subunit.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.788
AMSG_00088	AMSG_04649	A0A0L0D145	A0A0L0D9I7	Cleavage stimulation factor 77 kDa subunit.	Uncharacterized protein.	0.995
AMSG_00088	AMSG_06683	A0A0L0D145	A0A0L0DEY3	Cleavage stimulation factor 77 kDa subunit.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.971
AMSG_00088	AMSG_07003	A0A0L0D145	A0A0L0DFT3	Cleavage stimulation factor 77 kDa subunit.	Cleavage and polyadenylation specificity factor subunit 2.	0.906
AMSG_00088	AMSG_07171	A0A0L0D145	A0A0L0DFC1	Cleavage stimulation factor 77 kDa subunit.	Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily.	0.905
AMSG_00088	AMSG_09910	A0A0L0D145	A0A0L0DPA5	Cleavage stimulation factor 77 kDa subunit.	Uncharacterized protein.	0.960
AMSG_00088	AMSG_12403	A0A0L0D145	A0A0L0DSK3	Cleavage stimulation factor 77 kDa subunit.	SAP domain-containing protein.	0.948
AMSG_00312	AMSG_00088	A0A0L0D4G6	A0A0L0D145	RNA recognition domain-containing protein containing protein.	Cleavage stimulation factor 77 kDa subunit.	0.999
AMSG_00312	AMSG_01466	A0A0L0D4G6	A0A0L0DQQ5	RNA recognition domain-containing protein containing protein.	Cleavage and polyadenylation specificity factor subunit 1.	0.972
AMSG_00312	AMSG_02462	A0A0L0D4G6	A0A0L0D532	RNA recognition domain-containing protein containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.848
AMSG_00312	AMSG_04051	A0A0L0D4G6	A0A0L0D609	RNA recognition domain-containing protein containing protein.	CstF-50.	0.965
AMSG_00312	AMSG_04178	A0A0L0D4G6	A0A0L0D9G4	RNA recognition domain-containing protein containing protein.	Small nuclear ribonucleoprotein SmG.	0.850
AMSG_00312	AMSG_04354	A0A0L0D4G6	A0A0L0D7G0	RNA recognition domain-containing protein containing protein.	Uncharacterized protein.	0.959
AMSG_00312	AMSG_04492	A0A0L0D4G6	A0A0L0D799	RNA recognition domain-containing protein containing protein.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.805
AMSG_00312	AMSG_04649	A0A0L0D4G6	A0A0L0D9I7	RNA recognition domain-containing protein containing protein.	Uncharacterized protein.	0.975
AMSG_00312	AMSG_05062	A0A0L0D4G6	A0A0L0DA44	RNA recognition domain-containing protein containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.847