(13 nodes) Transcription, DNA-templated, and EcoEI R protein C-terminal network (Anabaena sp. 90)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	hsdR	Type I restriction enzyme. (912 aa)
	sigG	RNA polymerase sigma factor SigG; Belongs to the sigma-70 factor family. ECF subfamily. (218 aa)
	AFW93487.1	FUR family transcriptional regulator; Belongs to the Fur family. (141 aa)
	AFW94103.1	DNA helicase-like protein. (514 aa)
	rpoZ	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (78 aa)
	AFW94759.1	SNF2 family helicase-like protein. (1049 aa)
	sigD	RpoD family RNA polymerase sigma subunit SigD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (318 aa)
	sigF	RNA polymerase sigma factor SigF; Belongs to the sigma-70 factor family. (276 aa)
	rpoB	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1112 aa)
	rpoC1	DNA-directed RNA polymerase subunit gamma; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (630 aa)
	rpoC2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC2 subfamily. (1392 aa)
	sigB	RpoD family RNA polymerase sigma factor SigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (327 aa)
	AFW96819.1	Hypothetical protein. (122 aa)

Your Current Organism:

Anabaena sp. 90

NCBI taxonomy Id: 46234
Other names: A. sp. 90, Anabaena circinalis 90, Anabaena sp. strain 90

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFW93487.1	rpoB	ANA_C10693	ANA_C20003	FUR family transcriptional regulator; Belongs to the Fur family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.420
AFW93487.1	sigF	ANA_C10693	ANA_C13691	FUR family transcriptional regulator; Belongs to the Fur family.	RNA polymerase sigma factor SigF; Belongs to the sigma-70 factor family.	0.708
AFW93487.1	sigG	ANA_C10693	ANA_C10551	FUR family transcriptional regulator; Belongs to the Fur family.	RNA polymerase sigma factor SigG; Belongs to the sigma-70 factor family. ECF subfamily.	0.620
AFW94103.1	AFW94759.1	ANA_C11324	ANA_C12007	DNA helicase-like protein.	SNF2 family helicase-like protein.	0.780
AFW94103.1	AFW96819.1	ANA_C11324	ANA_C20375	DNA helicase-like protein.	Hypothetical protein.	0.988
AFW94103.1	hsdR	ANA_C11324	ANA_C10108	DNA helicase-like protein.	Type I restriction enzyme.	0.892
AFW94103.1	rpoB	ANA_C11324	ANA_C20003	DNA helicase-like protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.938
AFW94103.1	rpoC1	ANA_C11324	ANA_C20004	DNA helicase-like protein.	DNA-directed RNA polymerase subunit gamma; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.637
AFW94103.1	rpoC2	ANA_C11324	ANA_C20005	DNA helicase-like protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC2 subfamily.	0.637
AFW94103.1	rpoZ	ANA_C11324	ANA_C11547	DNA helicase-like protein.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.975
AFW94759.1	AFW94103.1	ANA_C12007	ANA_C11324	SNF2 family helicase-like protein.	DNA helicase-like protein.	0.780
AFW94759.1	hsdR	ANA_C12007	ANA_C10108	SNF2 family helicase-like protein.	Type I restriction enzyme.	0.489
AFW94759.1	rpoB	ANA_C12007	ANA_C20003	SNF2 family helicase-like protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.994
AFW94759.1	rpoC1	ANA_C12007	ANA_C20004	SNF2 family helicase-like protein.	DNA-directed RNA polymerase subunit gamma; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.945
AFW94759.1	rpoC2	ANA_C12007	ANA_C20005	SNF2 family helicase-like protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC2 subfamily.	0.945
AFW94759.1	rpoZ	ANA_C12007	ANA_C11547	SNF2 family helicase-like protein.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.975
AFW96819.1	AFW94103.1	ANA_C20375	ANA_C11324	Hypothetical protein.	DNA helicase-like protein.	0.988
AFW96819.1	hsdR	ANA_C20375	ANA_C10108	Hypothetical protein.	Type I restriction enzyme.	0.891
AFW96819.1	rpoB	ANA_C20375	ANA_C20003	Hypothetical protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.987
AFW96819.1	rpoC1	ANA_C20375	ANA_C20004	Hypothetical protein.	DNA-directed RNA polymerase subunit gamma; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.613