(17 nodes) Carbon fixation network (Anabaena sp. 90)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ccmK2	Carbon dioxide concentrating mechanism protein. (102 aa)
	ccmL	Carbon dioxide concentrating mechanism protein. (101 aa)
	ccmM	Ribulose bisphosphate carboxylase small chain. (553 aa)
	ccmN	Carbon dioxide concentrating mechanism protein. (269 aa)
	glpX-2	Fructose-1,6-bisphosphatase; Belongs to the FBPase class 1 family. (345 aa)
	ccmK2-2	Carbon dioxide concentrating mechanism protein. (115 aa)
	rbcL	Ribulose-bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. (476 aa)
	rbcX	RbcX protein. (126 aa)
	rbcS	Ribulose-bisphosphate carboxylase small subunit. (109 aa)
	AFW94125.1	Ribulose bisphosphate carboxylase activase. (407 aa)
	AFW95016.1	Microcompartments protein. (213 aa)
	AFW95023.1	Hypothetical protein. (361 aa)
	AFW95219.1	Type I glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (337 aa)
	ppc	Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family. (1013 aa)
	ccmO	Carbon dioxide concentrating mechanism protein. (263 aa)
	glpX	Fructose-1,6-bisphosphatase GlpX, class II; Belongs to the FBPase class 2 family. (345 aa)
	ccmK1	Carbon dioxide concentrating mechanism protein. (103 aa)

Your Current Organism:

Anabaena sp. 90

NCBI taxonomy Id: 46234
Other names: A. sp. 90, Anabaena circinalis 90, Anabaena sp. strain 90

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFW94125.1	AFW95023.1	ANA_C11346	ANA_C12288	Ribulose bisphosphate carboxylase activase.	Hypothetical protein.	0.769
AFW94125.1	ccmM	ANA_C11346	ANA_C12560	Ribulose bisphosphate carboxylase activase.	Ribulose bisphosphate carboxylase small chain.	0.424
AFW94125.1	ccmN	ANA_C11346	ANA_C12561	Ribulose bisphosphate carboxylase activase.	Carbon dioxide concentrating mechanism protein.	0.424
AFW94125.1	rbcL	ANA_C11346	ANA_C11337	Ribulose bisphosphate carboxylase activase.	Ribulose-bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site.	0.805
AFW94125.1	rbcS	ANA_C11346	ANA_C11339	Ribulose bisphosphate carboxylase activase.	Ribulose-bisphosphate carboxylase small subunit.	0.726
AFW94125.1	rbcX	ANA_C11346	ANA_C11338	Ribulose bisphosphate carboxylase activase.	RbcX protein.	0.686
AFW95016.1	ccmK1	ANA_C12281	ANA_C20715	Microcompartments protein.	Carbon dioxide concentrating mechanism protein.	0.681
AFW95016.1	ccmK2	ANA_C12281	ANA_C12557	Microcompartments protein.	Carbon dioxide concentrating mechanism protein.	0.755
AFW95016.1	ccmK2-2	ANA_C12281	ANA_C20716	Microcompartments protein.	Carbon dioxide concentrating mechanism protein.	0.743
AFW95016.1	ccmL	ANA_C12281	ANA_C12559	Microcompartments protein.	Carbon dioxide concentrating mechanism protein.	0.788
AFW95016.1	ccmO	ANA_C12281	ANA_C12562	Microcompartments protein.	Carbon dioxide concentrating mechanism protein.	0.730
AFW95023.1	AFW94125.1	ANA_C12288	ANA_C11346	Hypothetical protein.	Ribulose bisphosphate carboxylase activase.	0.769
AFW95023.1	ccmM	ANA_C12288	ANA_C12560	Hypothetical protein.	Ribulose bisphosphate carboxylase small chain.	0.692
AFW95023.1	ccmN	ANA_C12288	ANA_C12561	Hypothetical protein.	Carbon dioxide concentrating mechanism protein.	0.692
AFW95023.1	rbcL	ANA_C12288	ANA_C11337	Hypothetical protein.	Ribulose-bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site.	0.943
AFW95023.1	rbcS	ANA_C12288	ANA_C11339	Hypothetical protein.	Ribulose-bisphosphate carboxylase small subunit.	0.646
AFW95023.1	rbcX	ANA_C12288	ANA_C11338	Hypothetical protein.	RbcX protein.	0.935
AFW95219.1	glpX-2	ANA_C12497	ANA_C12974	Type I glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.	Fructose-1,6-bisphosphatase; Belongs to the FBPase class 1 family.	0.461
ccmK1	AFW95016.1	ANA_C20715	ANA_C12281	Carbon dioxide concentrating mechanism protein.	Microcompartments protein.	0.681
ccmK1	ccmK2-2	ANA_C20715	ANA_C20716	Carbon dioxide concentrating mechanism protein.	Carbon dioxide concentrating mechanism protein.	0.634