(15 nodes) Second mitotic wave involved in compound eye morphogenesis, and Signaling by NOTCH1 network (Drosophila pseudoobscura)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0R3NG32	Uncharacterized protein. (1222 aa)
	A0A0R3NUE4	Uncharacterized protein. (1632 aa)
	DpseGA25243	Uncharacterized protein, isoform A. (591 aa)
	DpseGA22572	Uncharacterized protein, isoform A. (296 aa)
	DpseGA28528	Uncharacterized protein. (2709 aa)
	DpseGA28721	MNNL domain-containing protein. (102 aa)
	B5DWT5	Uncharacterized protein. (1390 aa)
	B5E165	Uncharacterized protein. (338 aa)
	Q290X9	Hairy and enhancer of split related with YRPW motif. (417 aa)
	Q293P0	Uncharacterized protein. (852 aa)
	Q294I0	Uncharacterized protein, isoform A. (765 aa)
	Q29AG4	Uncharacterized protein. (353 aa)
	DpseGA19235	BHLH domain-containing protein. (217 aa)
	DpseGA17782	Uncharacterized protein, isoform A. (730 aa)
	DpseGA18056	Uncharacterized protein, isoform A. (976 aa)

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R3NG32	B5DWT5	A0A0R3NG32	B5DWT5	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A0R3NG32	DpseGA17782	A0A0R3NG32	Q29J56	Uncharacterized protein.	Uncharacterized protein, isoform A.	0.574
A0A0R3NG32	DpseGA25243	A0A0R3NG32	B5DHG8	Uncharacterized protein.	Uncharacterized protein, isoform A.	0.755
A0A0R3NG32	DpseGA28528	A0A0R3NG32	B5DM97	Uncharacterized protein.	Uncharacterized protein.	0.979
A0A0R3NG32	DpseGA28721	A0A0R3NG32	B5DUT0	Uncharacterized protein.	MNNL domain-containing protein.	0.430
A0A0R3NG32	Q293P0	A0A0R3NG32	Q293P0	Uncharacterized protein.	Uncharacterized protein.	0.618
A0A0R3NUE4	DpseGA25243	A0A0R3NUE4	B5DHG8	Uncharacterized protein.	Uncharacterized protein, isoform A.	0.968
A0A0R3NUE4	DpseGA28528	A0A0R3NUE4	B5DM97	Uncharacterized protein.	Uncharacterized protein.	0.689
B5DWT5	A0A0R3NG32	B5DWT5	A0A0R3NG32	Uncharacterized protein.	Uncharacterized protein.	0.900
B5DWT5	DpseGA17782	B5DWT5	Q29J56	Uncharacterized protein.	Uncharacterized protein, isoform A.	0.574
B5DWT5	DpseGA25243	B5DWT5	B5DHG8	Uncharacterized protein.	Uncharacterized protein, isoform A.	0.755
B5DWT5	DpseGA28528	B5DWT5	B5DM97	Uncharacterized protein.	Uncharacterized protein.	0.979
B5DWT5	Q293P0	B5DWT5	Q293P0	Uncharacterized protein.	Uncharacterized protein.	0.618
B5E165	DpseGA25243	B5E165	B5DHG8	Uncharacterized protein.	Uncharacterized protein, isoform A.	0.410
DpseGA17782	A0A0R3NG32	Q29J56	A0A0R3NG32	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.574
DpseGA17782	B5DWT5	Q29J56	B5DWT5	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.574
DpseGA17782	DpseGA18056	Q29J56	Q29LM8	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform A.	0.913
DpseGA17782	DpseGA28528	Q29J56	B5DM97	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.986
DpseGA17782	DpseGA28721	Q29J56	B5DUT0	Uncharacterized protein, isoform A.	MNNL domain-containing protein.	0.574
DpseGA18056	DpseGA17782	Q29LM8	Q29J56	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform A.	0.913