(12 nodes) Mixed, incl. Periodic partitioning by pair rule gene, and Anterior head development network (Drosophila pseudoobscura)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Dpse_hb	Hb, isoform A. (861 aa)
	DpseGA18381	Uncharacterized protein, isoform C. (559 aa)
	DpseGA25976	Uncharacterized protein. (600 aa)
	DpseGA22354	Uncharacterized protein. (726 aa)
	B5DYM9	Uncharacterized protein, isoform B. (514 aa)
	Dpse_eve	Homeobox even-skipped homolog protein. (359 aa)
	Q295F3	Uncharacterized protein. (292 aa)
	Q298V5	Uncharacterized protein. (493 aa)
	Q29CC0	Nuclear receptor subfamily 2 group E member 1. (454 aa)
	DpseGA17731	Uncharacterized protein. (373 aa)
	DpseGA10014	Uncharacterized protein, isoform A. (754 aa)
	DpseGA19807	Uncharacterized protein, isoform A. (646 aa)

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

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Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DpseGA10014	DpseGA19807	Q29MF5	Q29NK4	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform A.	0.555
DpseGA10014	Dpse_eve	Q29MF5	Q28Z10	Uncharacterized protein, isoform A.	Homeobox even-skipped homolog protein.	0.548
DpseGA10014	Dpse_hb	Q29MF5	A0A0R3NQ38	Uncharacterized protein, isoform A.	Hb, isoform A.	0.557
DpseGA17731	DpseGA19807	Q29MD5	Q29NK4	Uncharacterized protein.	Uncharacterized protein, isoform A.	0.468
DpseGA17731	Dpse_eve	Q29MD5	Q28Z10	Uncharacterized protein.	Homeobox even-skipped homolog protein.	0.548
DpseGA17731	Dpse_hb	Q29MD5	A0A0R3NQ38	Uncharacterized protein.	Hb, isoform A.	0.555
DpseGA18381	Dpse_eve	A0A0R3P9A4	Q28Z10	Uncharacterized protein, isoform C.	Homeobox even-skipped homolog protein.	0.545
DpseGA18381	Dpse_hb	A0A0R3P9A4	A0A0R3NQ38	Uncharacterized protein, isoform C.	Hb, isoform A.	0.634
DpseGA18381	Q295F3	A0A0R3P9A4	Q295F3	Uncharacterized protein, isoform C.	Uncharacterized protein.	0.562
DpseGA19807	DpseGA10014	Q29NK4	Q29MF5	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform A.	0.555
DpseGA19807	DpseGA17731	Q29NK4	Q29MD5	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.468
DpseGA19807	DpseGA25976	Q29NK4	B5DIF8	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.551
DpseGA22354	Q298V5	B5DNR0	Q298V5	Uncharacterized protein.	Uncharacterized protein.	0.550
DpseGA25976	DpseGA19807	B5DIF8	Q29NK4	Uncharacterized protein.	Uncharacterized protein, isoform A.	0.551
DpseGA25976	Dpse_eve	B5DIF8	Q28Z10	Uncharacterized protein.	Homeobox even-skipped homolog protein.	0.548
DpseGA25976	Dpse_hb	B5DIF8	A0A0R3NQ38	Uncharacterized protein.	Hb, isoform A.	0.581
Dpse_eve	DpseGA10014	Q28Z10	Q29MF5	Homeobox even-skipped homolog protein.	Uncharacterized protein, isoform A.	0.548
Dpse_eve	DpseGA17731	Q28Z10	Q29MD5	Homeobox even-skipped homolog protein.	Uncharacterized protein.	0.548
Dpse_eve	DpseGA18381	Q28Z10	A0A0R3P9A4	Homeobox even-skipped homolog protein.	Uncharacterized protein, isoform C.	0.545
Dpse_eve	DpseGA25976	Q28Z10	B5DIF8	Homeobox even-skipped homolog protein.	Uncharacterized protein.	0.548