(19 nodes) Mixed, incl. Protein of unknown function (DUF1431), and Cytosol aminopeptidase family, N-terminal domain network (Drosophila pseudoobscura)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DpseGA28050	Uncharacterized protein, isoform B. (177 aa)
	DpseGA28738	Uncharacterized protein. (169 aa)
	B5DW95	Uncharacterized protein. (172 aa)
	B5DWJ3	Uncharacterized protein. (343 aa)
	B5DWV7	Uncharacterized protein. (228 aa)
	B5E0Q0	Uncharacterized protein. (59 aa)
	B5E111	Uncharacterized protein. (143 aa)
	Q28WN7	Uncharacterized protein. (392 aa)
	Q28XX6	Uncharacterized protein. (524 aa)
	Q291C5	Uncharacterized protein. (416 aa)
	Q291C6	Uncharacterized protein. (216 aa)
	Q291T8	Uncharacterized protein. (528 aa)
	Q291U1	Uncharacterized protein. (527 aa)
	Q291Z8	Uncharacterized protein. (303 aa)
	Q292J4	Uncharacterized protein. (243 aa)
	Q292J5	Uncharacterized protein. (259 aa)
	DpseGA15041	Uncharacterized protein. (149 aa)
	DpseGA16698	Uncharacterized protein. (661 aa)
	DpseGA16651	Uncharacterized protein. (521 aa)

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

Send network to Cytoscape

Export your current network:

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file format is 'PNG': portable network graphic

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B5DW95	B5DWJ3	B5DW95	B5DWJ3	Uncharacterized protein.	Uncharacterized protein.	0.748
B5DW95	B5E0Q0	B5DW95	B5E0Q0	Uncharacterized protein.	Uncharacterized protein.	0.748
B5DW95	B5E111	B5DW95	B5E111	Uncharacterized protein.	Uncharacterized protein.	0.611
B5DW95	DpseGA15041	B5DW95	Q29JS2	Uncharacterized protein.	Uncharacterized protein.	0.750
B5DW95	DpseGA16651	B5DW95	Q2LZJ7	Uncharacterized protein.	Uncharacterized protein.	0.644
B5DW95	DpseGA16698	B5DW95	Q29MC9	Uncharacterized protein.	Uncharacterized protein.	0.750
B5DW95	DpseGA28050	B5DW95	A0A0R3NV49	Uncharacterized protein.	Uncharacterized protein, isoform B.	0.459
B5DW95	DpseGA28738	B5DW95	B5DUS7	Uncharacterized protein.	Uncharacterized protein.	0.612
B5DW95	Q28WN7	B5DW95	Q28WN7	Uncharacterized protein.	Uncharacterized protein.	0.755
B5DW95	Q28XX6	B5DW95	Q28XX6	Uncharacterized protein.	Uncharacterized protein.	0.891
B5DW95	Q291C5	B5DW95	Q291C5	Uncharacterized protein.	Uncharacterized protein.	0.714
B5DW95	Q291C6	B5DW95	Q291C6	Uncharacterized protein.	Uncharacterized protein.	0.758
B5DW95	Q291T8	B5DW95	Q291T8	Uncharacterized protein.	Uncharacterized protein.	0.730
B5DW95	Q291U1	B5DW95	Q291U1	Uncharacterized protein.	Uncharacterized protein.	0.645
B5DW95	Q291Z8	B5DW95	Q291Z8	Uncharacterized protein.	Uncharacterized protein.	0.707
B5DW95	Q292J4	B5DW95	Q292J4	Uncharacterized protein.	Uncharacterized protein.	0.735
B5DW95	Q292J5	B5DW95	Q292J5	Uncharacterized protein.	Uncharacterized protein.	0.753
B5DWJ3	B5DW95	B5DWJ3	B5DW95	Uncharacterized protein.	Uncharacterized protein.	0.748
B5DWJ3	B5DWV7	B5DWJ3	B5DWV7	Uncharacterized protein.	Uncharacterized protein.	0.872
B5DWJ3	B5E0Q0	B5DWJ3	B5E0Q0	Uncharacterized protein.	Uncharacterized protein.	0.740