(11 nodes) Mixed, incl. GRAF family, and GTPase-activator protein for Rho-like GTPases network (Drosophila pseudoobscura)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DpseGA16495	Uncharacterized protein, isoform B. (1029 aa)
	DpseGA25817	Leukotriene A(4) hydrolase; Belongs to the peptidase M1 family. (695 aa)
	DpseGA27908	Uncharacterized protein. (143 aa)
	DpseGA24002	Rho-GAP domain-containing protein. (441 aa)
	DpseGA23310	Uncharacterized protein. (220 aa)
	DpseGA29336	Rho-GAP domain-containing protein. (590 aa)
	DpseGA23973	Uncharacterized protein. (116 aa)
	DpseGA30044	Uncharacterized protein, isoform A. (727 aa)
	Q294C7	Uncharacterized protein, isoform A. (770 aa)
	DpseGA18539	Uncharacterized protein, isoform C. (1595 aa)
	DpseGA16714	Uncharacterized protein, isoform A. (891 aa)

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DpseGA16495	DpseGA18539	A0A0R3NV39	Q29FL8	Uncharacterized protein, isoform B.	Uncharacterized protein, isoform C.	0.509
DpseGA16714	Q294C7	Q2M1D6	Q294C7	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform A.	0.666
DpseGA18539	DpseGA16495	Q29FL8	A0A0R3NV39	Uncharacterized protein, isoform C.	Uncharacterized protein, isoform B.	0.509
DpseGA23973	DpseGA24002	B5DTP6	B5DT26	Uncharacterized protein.	Rho-GAP domain-containing protein.	0.451
DpseGA24002	DpseGA23973	B5DT26	B5DTP6	Rho-GAP domain-containing protein.	Uncharacterized protein.	0.451
Q294C7	DpseGA16714	Q294C7	Q2M1D6	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform A.	0.666