11 items (Drosophila pseudoobscura) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B5E0K0	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (210 aa)
	Q292N9	Transcription elongation factor SPT4. (116 aa)
	Q292S1	Transcription elongation factor SPT5. (1080 aa)
	DpseGA27654	Uncharacterized protein. (173 aa)
	Q296B8	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (131 aa)
	Q298X6	DNA-directed RNA polymerase II subunit RPB2. (1176 aa)
	Q299B2	DNA-directed RNA polymerase II subunit RPB9. (134 aa)
	RpII215	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1889 aa)
	DpseGA20659	RPOLD domain-containing protein. (275 aa)
	DpseGA19897	RNA_pol_L_2 domain-containing protein. (117 aa)
	DpseGA17632	Uncharacterized protein. (313 aa)

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B5E0K0	DpseGA17632	B5E0K0	Q29P72	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	Uncharacterized protein.	0.921
B5E0K0	DpseGA19897	B5E0K0	Q29MR4	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	RNA_pol_L_2 domain-containing protein.	0.938
B5E0K0	DpseGA20659	B5E0K0	Q29K78	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	RPOLD domain-containing protein.	0.948
B5E0K0	DpseGA27654	B5E0K0	Q294T7	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	Uncharacterized protein.	0.938
B5E0K0	Q292N9	B5E0K0	Q292N9	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	Transcription elongation factor SPT4.	0.911
B5E0K0	Q292S1	B5E0K0	Q292S1	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	Transcription elongation factor SPT5.	0.923
B5E0K0	Q296B8	B5E0K0	Q296B8	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.972
B5E0K0	Q298X6	B5E0K0	Q298X6	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	DNA-directed RNA polymerase II subunit RPB2.	0.952
B5E0K0	Q299B2	B5E0K0	Q299B2	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	DNA-directed RNA polymerase II subunit RPB9.	0.936
B5E0K0	RpII215	B5E0K0	Q29IN2	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.925
DpseGA17632	B5E0K0	Q29P72	B5E0K0	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.921
DpseGA17632	DpseGA19897	Q29P72	Q29MR4	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.990
DpseGA17632	DpseGA20659	Q29P72	Q29K78	Uncharacterized protein.	RPOLD domain-containing protein.	0.994
DpseGA17632	DpseGA27654	Q29P72	Q294T7	Uncharacterized protein.	Uncharacterized protein.	0.983
DpseGA17632	Q292N9	Q29P72	Q292N9	Uncharacterized protein.	Transcription elongation factor SPT4.	0.976
DpseGA17632	Q292S1	Q29P72	Q292S1	Uncharacterized protein.	Transcription elongation factor SPT5.	0.986
DpseGA17632	Q296B8	Q29P72	Q296B8	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.989
DpseGA17632	Q298X6	Q29P72	Q298X6	Uncharacterized protein.	DNA-directed RNA polymerase II subunit RPB2.	0.997
DpseGA17632	Q299B2	Q29P72	Q299B2	Uncharacterized protein.	DNA-directed RNA polymerase II subunit RPB9.	0.995
DpseGA17632	RpII215	Q29P72	Q29IN2	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996