22 items (Drosophila pseudoobscura) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B5E0K0	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (210 aa)
	Q29AR6	DNA-directed RNA polymerase I subunit RPA12. (121 aa)
	Q29AJ6	TATA box-binding protein-associated factor RNA polymerase I subunit B. (869 aa)
	B5DWI8	DNA-directed RNA polymerase I subunit RPA49. (385 aa)
	DpseGA27748	Uncharacterized protein. (152 aa)
	DpseGA10862	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (149 aa)
	DpseGA17896	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1126 aa)
	DpseGA19133	Uncharacterized protein, isoform B. (1364 aa)
	DpseGA17664	RPOLD domain-containing protein. (333 aa)
	DpseGA17133	Uncharacterized protein. (609 aa)
	DpseGA12515	Uncharacterized protein. (257 aa)
	DpseGA10493	RNA_pol_L_2 domain-containing protein. (110 aa)
	Q29BZ5	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
	DpseGA25490	Uncharacterized protein. (385 aa)
	DpseGA22581	Uncharacterized protein. (214 aa)
	DpseGA22602	Uncharacterized protein. (210 aa)
	DpseGA25946	Uncharacterized protein. (715 aa)
	B5E1D3	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (57 aa)
	Q296B8	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (131 aa)
	Q291K0	Transcription initiation factor TFIIH subunit 1. (587 aa)
	Q291D4	DNA-directed RNA polymerase I subunit RPA1. (1647 aa)
	Q28XN0	Uncharacterized protein. (856 aa)

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B5DWI8	B5E0K0	B5DWI8	B5E0K0	DNA-directed RNA polymerase I subunit RPA49.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.885
B5DWI8	B5E1D3	B5DWI8	B5E1D3	DNA-directed RNA polymerase I subunit RPA49.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.955
B5DWI8	DpseGA10493	B5DWI8	Q29CK4	DNA-directed RNA polymerase I subunit RPA49.	RNA_pol_L_2 domain-containing protein.	0.961
B5DWI8	DpseGA10862	B5DWI8	Q2M0A5	DNA-directed RNA polymerase I subunit RPA49.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.959
B5DWI8	DpseGA12515	B5DWI8	Q29JY4	DNA-directed RNA polymerase I subunit RPA49.	Uncharacterized protein.	0.991
B5DWI8	DpseGA17133	B5DWI8	Q29K22	DNA-directed RNA polymerase I subunit RPA49.	Uncharacterized protein.	0.965
B5DWI8	DpseGA17664	B5DWI8	Q29L21	DNA-directed RNA polymerase I subunit RPA49.	RPOLD domain-containing protein.	0.981
B5DWI8	DpseGA17896	B5DWI8	Q29N37	DNA-directed RNA polymerase I subunit RPA49.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.991
B5DWI8	DpseGA22581	B5DWI8	B5DLP1	DNA-directed RNA polymerase I subunit RPA49.	Uncharacterized protein.	0.885
B5DWI8	DpseGA22602	B5DWI8	B5DLL1	DNA-directed RNA polymerase I subunit RPA49.	Uncharacterized protein.	0.885
B5DWI8	DpseGA25490	B5DWI8	B5DUV6	DNA-directed RNA polymerase I subunit RPA49.	Uncharacterized protein.	0.900
B5DWI8	Q291D4	B5DWI8	Q291D4	DNA-directed RNA polymerase I subunit RPA49.	DNA-directed RNA polymerase I subunit RPA1.	0.994
B5DWI8	Q291K0	B5DWI8	Q291K0	DNA-directed RNA polymerase I subunit RPA49.	Transcription initiation factor TFIIH subunit 1.	0.616
B5DWI8	Q296B8	B5DWI8	Q296B8	DNA-directed RNA polymerase I subunit RPA49.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.968
B5DWI8	Q29AR6	B5DWI8	Q29AR6	DNA-directed RNA polymerase I subunit RPA49.	DNA-directed RNA polymerase I subunit RPA12.	0.983
B5DWI8	Q29BZ5	B5DWI8	Q29BZ5	DNA-directed RNA polymerase I subunit RPA49.	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	0.959
B5E0K0	B5DWI8	B5E0K0	B5DWI8	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	DNA-directed RNA polymerase I subunit RPA49.	0.885
B5E0K0	B5E1D3	B5E0K0	B5E1D3	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.945
B5E0K0	DpseGA10493	B5E0K0	Q29CK4	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	RNA_pol_L_2 domain-containing protein.	0.970
B5E0K0	DpseGA10862	B5E0K0	Q2M0A5	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.962