(19 nodes) ER to Golgi transport vesicle membrane network (Drosophila pseudoobscura)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DpseGA17139	t-SNARE coiled-coil homology domain-containing protein. (230 aa)
	A0A0R3NPI3	Uncharacterized protein, isoform A. (1266 aa)
	DpseGA22960	Sec16_C domain-containing protein. (2394 aa)
	DpseGA25950	Uncharacterized protein. (1279 aa)
	DpseGA23298	Uncharacterized protein. (122 aa)
	DpseGA12833	Uncharacterized protein. (833 aa)
	DpseGA20293	Uncharacterized protein; Belongs to the synaptobrevin family. (211 aa)
	DpseGA18426	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (216 aa)
	DpseGA23670	Uncharacterized protein. (137 aa)
	DpseGA29180	Vacuolar ATPase assembly integral membrane protein VMA21 homolog; Required for the assembly of the V0 complex of the vacuolar ATPase (V-ATPase) in the endoplasmic reticulum; Belongs to the VMA21 family. (108 aa)
	B5DZI1	Uncharacterized protein, isoform A. (1175 aa)
	B5E040	Vacuolar ATPase assembly integral membrane protein VMA21. (130 aa)
	I5ANM9	Uncharacterized protein, isoform A. (785 aa)
	I5APL5	Programmed cell death protein 6. (185 aa)
	Q28XI7	Uncharacterized protein, isoform A. (196 aa)
	Q298N7	GTP-binding protein SAR1. (193 aa)
	Q29A53	Vacuolar ATPase assembly integral membrane protein VMA21. (203 aa)
	Q29BI5	Protein transport protein SEC13. (356 aa)
	DpseGA19267	Vacuolar ATPase assembly integral membrane protein VMA21 homolog; Required for the assembly of the V0 complex of the vacuolar ATPase (V-ATPase) in the endoplasmic reticulum; Belongs to the VMA21 family. (108 aa)

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R3NPI3	B5DZI1	A0A0R3NPI3	B5DZI1	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform A.	0.999
A0A0R3NPI3	DpseGA12833	A0A0R3NPI3	Q29I21	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.594
A0A0R3NPI3	DpseGA18426	A0A0R3NPI3	Q2LZL8	Uncharacterized protein, isoform A.	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.715
A0A0R3NPI3	DpseGA20293	A0A0R3NPI3	Q29FP3	Uncharacterized protein, isoform A.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.879
A0A0R3NPI3	DpseGA22960	A0A0R3NPI3	B5DKY4	Uncharacterized protein, isoform A.	Sec16_C domain-containing protein.	0.955
A0A0R3NPI3	DpseGA25950	A0A0R3NPI3	B5DIC2	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.994
A0A0R3NPI3	I5ANM9	A0A0R3NPI3	I5ANM9	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform A.	0.999
A0A0R3NPI3	I5APL5	A0A0R3NPI3	I5APL5	Uncharacterized protein, isoform A.	Programmed cell death protein 6.	0.816
A0A0R3NPI3	Q28XI7	A0A0R3NPI3	Q28XI7	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform A.	0.816
A0A0R3NPI3	Q298N7	A0A0R3NPI3	Q298N7	Uncharacterized protein, isoform A.	GTP-binding protein SAR1.	0.998
A0A0R3NPI3	Q29BI5	A0A0R3NPI3	Q29BI5	Uncharacterized protein, isoform A.	Protein transport protein SEC13.	0.999
B5DZI1	A0A0R3NPI3	B5DZI1	A0A0R3NPI3	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform A.	0.999
B5DZI1	DpseGA12833	B5DZI1	Q29I21	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.764
B5DZI1	DpseGA18426	B5DZI1	Q2LZL8	Uncharacterized protein, isoform A.	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.794
B5DZI1	DpseGA20293	B5DZI1	Q29FP3	Uncharacterized protein, isoform A.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.987
B5DZI1	DpseGA22960	B5DZI1	B5DKY4	Uncharacterized protein, isoform A.	Sec16_C domain-containing protein.	0.984
B5DZI1	DpseGA25950	B5DZI1	B5DIC2	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.998
B5DZI1	I5ANM9	B5DZI1	I5ANM9	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform A.	0.999
B5DZI1	Q298N7	B5DZI1	Q298N7	Uncharacterized protein, isoform A.	GTP-binding protein SAR1.	0.981
B5DZI1	Q29BI5	B5DZI1	Q29BI5	Uncharacterized protein, isoform A.	Protein transport protein SEC13.	0.998