(5 nodes) Phosphatidylinositol 3-kinase signaling network (Drosophila pseudoobscura)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DpseGA11104	Uncharacterized protein, isoform A; Belongs to the PI3/PI4-kinase family. (1890 aa)
	DpseGA19047	Uncharacterized protein, isoform C. (503 aa)
	Q29AY5	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha/beta/delta. (1112 aa)
	Q29CB8	Uncharacterized protein. (200 aa)
	DpseGA15435	Uncharacterized protein. (515 aa)

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DpseGA11104	DpseGA15435	Q29DX8	Q29NX3	Uncharacterized protein, isoform A; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.960
DpseGA11104	DpseGA19047	Q29DX8	A0A0R3NW51	Uncharacterized protein, isoform A; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein, isoform C.	0.942
DpseGA11104	Q29AY5	Q29DX8	Q29AY5	Uncharacterized protein, isoform A; Belongs to the PI3/PI4-kinase family.	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha/beta/delta.	0.650
DpseGA15435	DpseGA11104	Q29NX3	Q29DX8	Uncharacterized protein.	Uncharacterized protein, isoform A; Belongs to the PI3/PI4-kinase family.	0.960
DpseGA15435	DpseGA19047	Q29NX3	A0A0R3NW51	Uncharacterized protein.	Uncharacterized protein, isoform C.	0.958
DpseGA15435	Q29AY5	Q29NX3	Q29AY5	Uncharacterized protein.	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha/beta/delta.	0.999
DpseGA19047	DpseGA11104	A0A0R3NW51	Q29DX8	Uncharacterized protein, isoform C.	Uncharacterized protein, isoform A; Belongs to the PI3/PI4-kinase family.	0.942
DpseGA19047	DpseGA15435	A0A0R3NW51	Q29NX3	Uncharacterized protein, isoform C.	Uncharacterized protein.	0.958
DpseGA19047	Q29AY5	A0A0R3NW51	Q29AY5	Uncharacterized protein, isoform C.	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha/beta/delta.	0.971
DpseGA19047	Q29CB8	A0A0R3NW51	Q29CB8	Uncharacterized protein, isoform C.	Uncharacterized protein.	0.682
Q29AY5	DpseGA11104	Q29AY5	Q29DX8	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha/beta/delta.	Uncharacterized protein, isoform A; Belongs to the PI3/PI4-kinase family.	0.650
Q29AY5	DpseGA15435	Q29AY5	Q29NX3	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha/beta/delta.	Uncharacterized protein.	0.999
Q29AY5	DpseGA19047	Q29AY5	A0A0R3NW51	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha/beta/delta.	Uncharacterized protein, isoform C.	0.971
Q29CB8	DpseGA19047	Q29CB8	A0A0R3NW51	Uncharacterized protein.	Uncharacterized protein, isoform C.	0.682